PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01704.1.p
Common NameEUGRSUZ_C01704
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 476aa    MW: 52091.7 Da    PI: 10.3047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01704.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-065272526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       Cr++++ G C  G++CkF+H+
  Eucgr.C01704.1.p 52 YCRHYLQ-GRCTEGEKCKFSHD 72
                      5******.*************7 PP
2zf-CCCH18.14.9e-06107127525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       +C+++a  G+C++Gd+C F+H
  Eucgr.C01704.1.p 107 PCSNYASKGFCSRGDNCMFSH 127
                       7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.4694774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-64872IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-44873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-55272IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-45272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.32977101IPR000571Zinc finger, CCCH-type
SMARTSM003560.2479103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713102130IPR000571Zinc finger, CCCH-type
SMARTSM003560.06105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5107131IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
ELQDKKKRRT LSKERKEKKK QKERRKRAQK NRELGVKRLK LQPVLKQKTV TYCRHYLQGR  60
CTEGEKCKFS HDTVPLTKST KPCCHYARNS CMKGEDCPFD HQLSKYPCSN YASKGFCSRG  120
DNCMFSHKIE DSTIASNTSN NESNHPAMPL ILKKQPGTIV GSHENNAHTA VDTSHATFKY  180
LKPNMIGSAT NLPVLKPERG SSNSAEKSLL ISFNKSEMGS SSAKDGSRIG IHTGENASGT  240
VQNVDPISKT TPLLPPKGVN FLSFGSSSKQ TDTKKPANFL FNTSNVNILK HSTSTQQKGD  300
SNIIVNDESH PMSMLPNSNE ATERIEPVVK PEDLMRFSSR KASLHDFTPG EQSGSSSVGN  360
YAIDRSLQGK PSASSTTHSS SMTTWKLPVS PITPGQPSDS MPRLYRNISS SAQKALSSTL  420
AFAAMFETDT RSKHADGHRA VTGKAGEDSA HGFQNDSAKA SKILDLLANI GKKKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
148KKKRR
2626KRRTLSKERKEKKKQKERRKR
31426RKEKKKQKERRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01704.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048162.10.0PREDICTED: uncharacterized protein LOC104437009
TrEMBLA0A059CPF50.0A0A059CPF5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010048162.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516