PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01942.1.p
Common NameEUGRSUZ_C01942
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15496.8 Da    PI: 11.9046
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01942.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.2e-3183132150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                       krien++ rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ 
  Eucgr.C01942.1.p  83 KRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFL 132
                       79**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.53E-2975135IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-4175134IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.42775135IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-317797IPR002100Transcription factor, MADS-box
CDDcd002654.14E-3877134No hitNo description
PROSITE patternPS00350077131IPR002100Transcription factor, MADS-box
PfamPF003196.9E-2884131IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-3197112IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-31112133IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
SSVSFSTSAS SRRRLRSPAF RDLIRATPSV PRPLRFGASI ECSSPSISSR SSSSDLFLVF  60
CGLRERERER GRGEMVRGKT QMKRIENDTS RQVTFSKRRN GLLKKAFELS VLCDAEVALI  120
IFSPRGKLYE FLSSTRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-1775134160MEF2 CHIMERA
6byy_B1e-1775134160MEF2 CHIMERA
6byy_C1e-1775134160MEF2 CHIMERA
6byy_D1e-1775134160MEF2 CHIMERA
6bz1_A1e-1775134160MEF2 CHIMERA
6bz1_B1e-1775134160MEF2 CHIMERA
6bz1_C1e-1775134160MEF2 CHIMERA
6bz1_D1e-1775134160MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01942.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0866421e-136AF086642.1 Eucalyptus globulus subsp. globulus putative MADS box transcription factor ETL mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451918.17e-34PREDICTED: MADS-box protein SOC1-like isoform X3
TrEMBLA0A059CQU42e-89A0A059CQU4_EUCGR; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-31AGAMOUS-like 20