PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02135.1.p
Common NameEUGRSUZ_C02135, LOC104437273
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 395aa    MW: 43891.7 Da    PI: 9.0224
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02135.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.65.8e-122096280
          trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
                      W+    l L++    +e +  ++ +  ++We +++++    + r+++qC+ kwe+l  +y+++k++e++  s++ s ++
  Eucgr.C02135.1.p 20 WSAGNLLILVNEIAAVEGDCLNALSSYQKWEIIAENCTVLDVDRTSNQCRRKWESLLAEYRRVKQHESR--SGVNSYWS 96
                      777777777777888888888888999****************************************98..56666775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-92095No hitNo description
PROSITE profilePS500906.7482076IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MKQEMGSGPR RTRSQAAPDW SAGNLLILVN EIAAVEGDCL NALSSYQKWE IIAENCTVLD  60
VDRTSNQCRR KWESLLAEYR RVKQHESRSG VNSYWSLGRD RKKVLGLPET FDRELFEAIN  120
NLLMAREDRA DTEPDSDPEA EGDTREAAVC KSVSKRKRKK SRHVIVMREH PHPITHHIVQ  180
GLPTTSPLKD KSTKSSVPGE CSENISGSKR KSGRSLKSGR SLKSKRNKKS KRNKKSKEST  240
SPKIVVQGLP TMSPLKDITM ALPTTSPLKD NAMELDVPEK CSENILEERP QTCRADANVT  300
PVENPKGKKL KESGVEESGK TSEDEQEQTM ASTLRKNAEL IQRIANGGLA DQECIENSRT  360
EFIRRQGDEI IACLGTIISN LNQLCGVVQV KGCD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02135.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048492.10.0PREDICTED: uncharacterized protein LOC104437273
TrEMBLA0A059CQT90.0A0A059CQT9_EUCGR; Uncharacterized protein
STRINGXP_010048492.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.15e-53sequence-specific DNA binding transcription factors