PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02178.2.p
Common NameEUGRSUZ_C02178
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 1054aa    MW: 116700 Da    PI: 6.3866
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02178.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.59e-2271172199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  Eucgr.C02178.2.p  71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDTMWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--R 159
                       99*****************************954.5444.48************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++++l+++++r+
  Eucgr.C02178.2.p 160 DDKQQLLLGIRRA 172
                       567778**99997 PP
2Auxin_resp1095.1e-36197285183
        Auxin_resp   1 aahaastksvFevvYnP.....rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+v+YnP     ras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++g+sd+dpvrW++S+Wr+L+
  Eucgr.C02178.2.p 197 AAHAAANNSPFTVFYNPscfalRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEDSGTRRFMGTITGMSDIDPVRWKDSQWRNLQ 285
                       79***************8888889***************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-4360200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-4065186IPR015300DNA-binding pseudobarrel domain
CDDcd100175.75E-1770162No hitNo description
PfamPF023621.1E-1971172IPR003340B3 DNA binding domain
PROSITE profilePS5086311.84371173IPR003340B3 DNA binding domain
SMARTSM010192.6E-2171173IPR003340B3 DNA binding domain
PfamPF065072.5E-31197285IPR010525Auxin response factor
PfamPF023092.5E-79391026IPR033389AUX/IAA domain
PROSITE profilePS5174526.8849411025IPR000270PB1 domain
SuperFamilySSF542779.42E-79521019No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1054 aa     Download sequence    Send to blast
MKKDVDAQVP NYPNLPSKLL CLLHSVTLHA DPETDEVFAQ MTLQPVPSFD KEALLRSDLA  60
LKTTKPQPDF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LMARDLHDTM  120
WNFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD DKQQLLLGIR RANRQPTNLS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPSCFALRA SPSEFVIPLA KYYKAVYSNQ  240
ISLGMRFRMM FETEDSGTRR FMGTITGMSD IDPVRWKDSQ WRNLQVGWDE STAGEKRTRV  300
SSWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDLSDLDS LFKRTTMPWL VDDLSMKDPP  360
ALSGLGFMHW MSMQQSPSFA NSIQSNYMPN LSNSVLQNLS GTDPSRQLGF SAPQMAQLNN  420
LQFNTQRPPQ QAQQLDQLTK LPSTLNPLSN IVQPQQQLTD ISQQSRQSLI NHTLPSTQVQ  480
AQVLQSQSLI QSSTLLPQQS LNQNQPFHRS LPQNLHQPQQ QQIMGQNQQQ SALNSQMPDQ  540
SSSQLPMPDN QIQLQMIQKL QQQQQQQQSL LAQQSALQQP THPQQLQEQR QHPDVSQSFS  600
KSMVTSQMLE MPQSTANSFS QPNIIPQQIQ KNNSQLNVRF SNLSQQPKFQ QEQSGLLPEM  660
VGHMGLPQIS TSHASASASM LTGAAAGGPS VTTDDMPCSA SASGQNCANI VQSMMNGRPH  720
RSASISEDMS QSTATFWNPS ALETIGSNGN NMMKDFQPKP DVKPSLDVSK GQNQGFFSAQ  780
TYLNGATTQT DYLDASSSTT SVCLSQSDAH IQQNNSSVSY NQQSMLFRDT SQDREVQADI  840
RSSVPFSSNA DVQAGIPVNS DSMFGKGMVG LGKGFANDVP SAGILADYDN KEPQQLSSSM  900
VSQSFGVSDV AFNLMESALN ESTLVSRGPW GPAAPQFQRM RTFTKVYKRG AVGRSVDITR  960
YSGYDELKQD LARRFGIEGQ LEDGQKVGWK LVYVDHENDV LLVGDDPWED FVNCVRCIKI  1020
LSPQEVQQMS LDGDFGNTTL PNQACSSSDG GNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-141230689388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02178.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048533.10.0PREDICTED: auxin response factor 19 isoform X1
TrEMBLA0A059CQR10.0A0A059CQR1_EUCGR; Auxin response factor
STRINGXP_010048533.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19