PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02208.1.p
Common NameEUGRSUZ_C02208, LOC104437326
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 252aa    MW: 28263.3 Da    PI: 9.5922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02208.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-1362104754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Eucgr.C02208.1.p  62 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 104
                       57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.52655104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1758119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.99E-1258109No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1661119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-1561110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-1162104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLRNTRTIGR RPCSTKMKSS TDHHIRKSLE NYGSWVDEAI SGYYDSSSPD GAASTAASKN  60
IVSERNRRKK LNERLFALRA VVPNISKMDK ASIIKDAIDY IQELHDQERR IQAEILELES  120
GKLKKGSGGY DFDQDLPAYL RSKKKRTDAF YDSGGSRISP IEVLELRITY MGEKTLVVSL  180
TCSKRTDTMV KLCEVFESLK LKIITANITS FSGRLLKTVF IEADENEKEN LKTKIETAIA  240
ALNDPQSPMS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1460120969Transcription factor MYC2
5gnj_B4e-1460120969Transcription factor MYC2
5gnj_E4e-1460120969Transcription factor MYC2
5gnj_F4e-1460120969Transcription factor MYC2
5gnj_G4e-1460120969Transcription factor MYC2
5gnj_I4e-1460120969Transcription factor MYC2
5gnj_M4e-1460120969Transcription factor MYC2
5gnj_N4e-1460120969Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02208.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048564.10.0PREDICTED: transcription factor bHLH35 isoform X2
SwissprotQ2HIV93e-92BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A059CRK70.0A0A059CRK7_EUCGR; Uncharacterized protein
STRINGXP_010048564.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-93bHLH family protein