PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02811.1.p
Common NameEUGRSUZ_C02811
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CPP
Protein Properties Length: 571aa    MW: 62202.9 Da    PI: 8.3074
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02811.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.32e-15131169341
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +k+CnCkkskClk+YC+Cfaag +C e C+C++C N+ +
  Eucgr.C02811.1.p 131 CKRCNCKKSKCLKLYCDCFAAGMYCVEPCSCHGCLNRPQ 169
                       79**********************************875 PP
2TCR51.52e-16217255139
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                       ++k+gCnCkks ClkkYCeC++a++ Cs++C+Ce+CkN 
  Eucgr.C02811.1.p 217 RHKRGCNCKKSMCLKKYCECYQANVGCSDNCRCEGCKNV 255
                       589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.5E-14129170IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.731130257IPR005172CRC domain
PfamPF036382.2E-11132167IPR005172CRC domain
SMARTSM011147.1E-18217258IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.9E-12219254IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MEDLDLSRPN SNIISSKRPV REPYKPVTSI LANRQCGSSP IIASKPSGIG LHLNSIVGTR  60
TKVSETATSA VSDSLPEIEG QNLLKPHEHY DTPREKRKLD LAVVDGSEEF IQLSPKKKRN  120
KTMAAFSGDG CKRCNCKKSK CLKLYCDCFA AGMYCVEPCS CHGCLNRPQY EQTVLETRQQ  180
IESRNPLAFA PKIIERSGDF SANNREDGVS STPASARHKR GCNCKKSMCL KKYCECYQAN  240
VGCSDNCRCE GCKNVYGTKE DYCVTREVTG SRVSERRLEG INDEKPQRVA SEKDHLRTHT  300
YEPVQLIPQT PSLQFSDHGR GPLRSQLSTR SILSPNSDQK ILSSAKSGRP SGSVDNGDIL  360
QEGQKDTLES GSFNQVADNN DAENETVDEF SPRRDSLLNL CRLTPISSPR MKAGSSSESS  420
KAMDNICTSI IPAFPVSNHL AGNSRRWHCS PVTPATQLVG AKSCEDPMSD VGLSAILGDD  480
TPEVLKDNPT AAKSVKVSSP SRKRVSPPHN HLHGLNTSSS VALKSGRKFI LKAVPAFPPL  540
TPCIGSKGSS GENSCDYQDD SAPSDKTDWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1713225512121Protein lin-54 homolog
5fd3_B2e-1713225512121Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02811.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048988.10.0PREDICTED: protein tesmin/TSO1-like CXC 4 isoform X1
RefseqXP_010048989.10.0PREDICTED: protein tesmin/TSO1-like CXC 4 isoform X1
TrEMBLA0A059CTF90.0A0A059CTF9_EUCGR; Uncharacterized protein
STRINGXP_010048988.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151961015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-67Tesmin/TSO1-like CXC domain-containing protein