PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02900.1.p
Common NameEUGRSUZ_C02900
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CPP
Protein Properties Length: 596aa    MW: 65713.5 Da    PI: 7.9132
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.72.7e-14189226442
               TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                       k CnCk s+Clk+YCeCf+ag++C+  C+C +C+N+ee+
  Eucgr.C02900.1.p 189 KLCNCKSSRCLKLYCECFSAGVYCDG-CNCMNCQNNEEN 226
                       78************************.*********986 PP
2TCR52.41e-16270309140
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       k++kgC+Ckks ClkkYCeCf+ag+ Cse+CkC+dCkN e
  Eucgr.C02900.1.p 270 KHNKGCQCKKSGCLKKYCECFQAGVLCSENCKCKDCKNFE 309
                       589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.1E-15186226IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.433187310IPR005172CRC domain
PfamPF036384.5E-11189224IPR005172CRC domain
SMARTSM011144.2E-19270311IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.8E-13273308IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MMDESEAGSD FAPQKPARQL DFTAICRSSA AASVALTEHQ EPPAQPQPPP QFGTQLEFRL  60
PSESESRRQS QSEKAVQWQP RQIQPRLFRP VQLQSPLQPP QVQYQLKFCV PQGKPPQVQA  120
QSPPPRIMIL NSNLQPQPQP QLQVIPSTQQ THPLHKVPVP AVEVGKPESP ISRPQIATEA  180
KYFTPTKPKL CNCKSSRCLK LYCECFSAGV YCDGCNCMNC QNNEENEPTR KFAVRAILER  240
NPEAFRPKIA TSPHGLQDNG DVGGIQMVGK HNKGCQCKKS GCLKKYCECF QAGVLCSENC  300
KCKDCKNFEG SEERMTLFHG THDAMAYIQR AANAAINGAV GSSGYGVPPA MKKIKLDNFS  360
SMPRNGRSSR ASARYQQERK SGAYVAGVAS SPSTSIFYPA NAAMPGPSKF TYRSPLANML  420
QPEDMKKFCS LLVSISTEAR TTFAEKEART DQQKEQEDIE DSLPLFAKAL EHGQKDSAVQ  480
KGMNDDNLSR SLAEREGTID CASSGEALQN DQPVSPETLA LMCEEKDAMH MLDGLENGVY  540
DHTCPTSAKF NSGGDRRGVY VEQEKVVLTT FLHFLDNLIT HRSKGKYLDI LPCNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-3018531910132Protein lin-54 homolog
5fd3_B7e-3018531910132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049088.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotQ9SZD11e-115TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A059CTL60.0A0A059CTL6_EUCGR; Uncharacterized protein
STRINGXP_010049088.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-107Tesmin/TSO1-like CXC domain-containing protein