PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02983.1.p
Common NameEUGRSUZ_C02983, LOC104437804
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 361aa    MW: 41469.3 Da    PI: 8.1045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02983.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-066688123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C  Cg +F  + +Lk+H++ H
  Eucgr.C02983.1.p 66 YTCDECGVTFMKPAHLKQHMQGH 88
                      9*******************988 PP
2zf-C2H215.55e-0594118123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       +kC+  dC+ s++rk++L rH   H
  Eucgr.C02983.1.p  94 FKCSieDCPASYRRKDHLARHFLQH 118
                       89*******************7766 PP
3zf-C2H217.11.5e-05123145121
                       EEET..TTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHir 21 
                       ++Cp   C+ksF  + n+krH  
  Eucgr.C02983.1.p 123 FSCPvdGCNKSFAYQGNMKRHVI 145
                       89*******************75 PP
4zf-C2H218.45.8e-06165189123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk+F+  s L++H  +H
  Eucgr.C02983.1.p 165 HVCPevGCGKVFNFASKLRKHEDSH 189
                       79*******************9888 PP
5zf-C2H210.70.0016199220323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C  C k Fs+ ++Lk H+++ H
  Eucgr.C02983.1.p 199 CCECMKYFSNADSLKEHMQLdH 220
                       999***************9988 PP
6zf-C2H216.52.3e-05255280123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C    C  +Fs+ksnL++H +  H
  Eucgr.C02983.1.p 255 FRCDveGCLCVFSTKSNLRQHVKAvH 280
                       899999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4112250IPR007087Zinc finger, C2H2
SMARTSM00355582244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.13E-1164118No hitNo description
Gene3DG3DSA:3.30.160.607.8E-106494IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128742.3E-46688No hitNo description
PROSITE profilePS5015713.7136693IPR007087Zinc finger, C2H2
SMARTSM003550.00146688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM003550.006994118IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.43294121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-995120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SuperFamilySSF576673.69E-8104154No hitNo description
Gene3DG3DSA:3.30.160.601.3E-7121149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.905123153IPR007087Zinc finger, C2H2
SMARTSM003551.8E-4123148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-7160189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.93E-5163217No hitNo description
PROSITE profilePS5015710.305165194IPR007087Zinc finger, C2H2
SMARTSM003550.0085165189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167189IPR007087Zinc finger, C2H2
SMARTSM003550.95197220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199220IPR007087Zinc finger, C2H2
SMARTSM0035572223244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.86E-8236297No hitNo description
Gene3DG3DSA:3.30.160.602.8E-6255280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.385255285IPR007087Zinc finger, C2H2
SMARTSM003550.0019255280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257280IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4281309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.8286312IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767286312IPR007087Zinc finger, C2H2
PROSITE patternPS000280288312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGEEEEDSCE KSGPVFRDIR RYYCEYCGIC RSKKSIITSH IHSHHKGEME AAMARGVEEK  60
EGAKVYTCDE CGVTFMKPAH LKQHMQGHLL ERPFKCSIED CPASYRRKDH LARHFLQHQG  120
KIFSCPVDGC NKSFAYQGNM KRHVIDIHND ELPSTSGEFK SPKQHVCPEV GCGKVFNFAS  180
KLRKHEDSHV KLETLEAFCC ECMKYFSNAD SLKEHMQLDH QLVNCEICGT RQLRKNIQRH  240
LCTHEKKNSA DSEVFRCDVE GCLCVFSTKS NLRQHVKAVH LEVRPFVCGY KDCGKKFAYK  300
HVRDKHEKTG CHVYTPGDFE ESDEQFRSRP RGGRKTKCPT IESLLRKRVT LPGELDFLSE  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A5e-186225018190Aart
2i13_B5e-186225018190Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328336RPRGGRKTK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02983.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049136.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-119TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059CTW70.0A0A059CTW7_EUCGR; Uncharacterized protein
STRINGXP_010049136.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-113transcription factor IIIA