PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03048.1.p
Common NameEUGRSUZ_C03048, LOC104437846
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 322aa    MW: 35411.6 Da    PI: 8.6953
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.7e-19182215134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Eucgr.C03048.1.p 182 CTDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 215
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.112176212IPR000679Zinc finger, GATA-type
SMARTSM004017.1E-19176229IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12176215No hitNo description
Gene3DG3DSA:3.30.50.102.8E-15180215IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.37E-14181213No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16182215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNPVYLNPPE APSFPLLERK VDQTLQFFIS PHEEPPSSPP SSSMLSASLP NETEDQSHKP  60
CGRSETPVEQ ADRHGASKHM RLFSSSSLLQ PMVSESETSN RGQQKSFSFN GEDGEEVNRD  120
FGIKWMPLKM RILQKMKNTT YGNGSTEDES MQFVDEFAKN HHRQDRTEIR FSSNGNNAIR  180
VCTDCNTTTT PLWRSGPRGP KSLCNACGIR QRKARRALAE AAAAAAAGGA AVATTDPTSM  240
RLKGHNKEKK SRPSHAGQIC KKQSKQFTSQ ADSSSHGEKN LFFRDFTLGL SKSSAFLRAF  300
PQDEAEAAIL LMELSCGFVH G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03048.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049197.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A059CTZ30.0A0A059CTZ3_EUCGR; Uncharacterized protein
STRINGXP_010049197.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-32cytokinin-responsive gata factor 1