PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03056.1.p
Common NameEUGRSUZ_C03056, LOC104437856
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 367aa    MW: 41266 Da    PI: 4.2856
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.2e-34521432102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k++e++ed++++ ++sws  +nsf+v+d+++fa+++LpkyFkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll
  Eucgr.C03056.1.p  52 FLMKTFEMVEDPSTDAVVSWSGAKNSFIVWDSHRFASTLLPKYFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLL 135
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+++
  Eucgr.C03056.1.p 136 KTIKRRRN 143
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.35E-3448141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-5748141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-3748141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3052141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-185275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-1890102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-18103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MERVIVIKEE DRDQEREDVI VCSTGSSSSS GSAAAAAPRP MEGLHEVGPP PFLMKTFEMV  60
EDPSTDAVVS WSGAKNSFIV WDSHRFASTL LPKYFKHGNF SSFIRQLNTY GFRKVDPDRW  120
EFANEGFLGG QKHLLKTIKR RRNVPQNQQQ HGATACVELG QFGLEGELER LTRDRNLLMS  180
EIAKLKQQQQ HSMELIAAME DRLQRTENKQ QQMLTFLAKA LSNPSFVQNL AQRKELQSLG  240
IGKKRRLTAS PSLENLQADQ DLEELGPIES DMETLLYGAL ENESSIDIED PLGSSMPGTN  300
GDELDSVNET IWEELLNEDA IPEEEWPLGD ESDFEVDVED LVENPPDWGE DLNELADQIG  360
YLRSKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-255014118120Heat shock factor protein 1
5hdg_A5e-25501418110Heat shock factor protein 1
5hdn_A5e-25501418110Heat shock factor protein 1
5hdn_B5e-25501418110Heat shock factor protein 1
5hdn_C5e-25501418110Heat shock factor protein 1
5hdn_D5e-25501418110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03056.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049209.10.0PREDICTED: heat shock factor protein HSF30 isoform X2
RefseqXP_018726803.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_018726804.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotP411521e-128HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A059CTI50.0A0A059CTI5_EUCGR; Uncharacterized protein
STRINGXP_010049209.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116722732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-113heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]