PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03153.1.p
Common NameEUGRSUZ_C03153, LOC104437928
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 237aa    MW: 26840.2 Da    PI: 4.8961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03153.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++ Ed++l+d+vk +G g W ++ +  g++R++k+c++rw++yl
  Eucgr.C03153.1.p 16 KGVWSALEDQILIDYVKVHGQGKWGKVRKVTGLRRCGKSCRLRWLNYL 63
                      799*******************************************97 PP
2Myb_DNA-binding51.81.8e-1669112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  Eucgr.C03153.1.p  69 RGNISLEEEELIIRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNS 112
                       78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7171163IPR017930Myb domain
SuperFamilySSF466891.39E-2814110IPR009057Homeodomain-like
SMARTSM007171.4E-131565IPR001005SANT/Myb domain
PfamPF002491.1E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-211870IPR009057Homeodomain-like
CDDcd001675.49E-91963No hitNo description
PROSITE profilePS5129425.63864118IPR017930Myb domain
SMARTSM007179.4E-1668116IPR001005SANT/Myb domain
PfamPF002491.7E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2571119IPR009057Homeodomain-like
CDDcd001675.15E-1073111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRNPSSGKD GLKLKKGVWS ALEDQILIDY VKVHGQGKWG KVRKVTGLRR CGKSCRLRWL  60
NYLRPDIKRG NISLEEEELI IRLHKLLGNR WALIAGRLPG RTDNEIKNYW NSTIKKKLVQ  120
ENGDQPMNSK WEDDKPLNET ATAESQGDAH RESKPCNSEG VVSDRMMESI EEKGEGGDCE  180
DDTISWENMM MDLNVEDMCM SENQHSELFE GNEDGGNQNG WISEEMLSTW VAELLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28141185108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03153.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049278.11e-172PREDICTED: transcription factor WER
SwissprotO496082e-53MYB32_ARATH; Transcription factor MYB32
TrEMBLA0A059CTT81e-170A0A059CTT8_EUCGR; Uncharacterized protein
STRINGXP_010049278.11e-171(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.16e-42myb domain protein 32
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]