PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C03166.1.p

Common Name

EUGRSUZ_C03166

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 246aa MW: 28360.6 Da PI: 7.6692

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C03166.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.9	1.6e-18	13	96	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y Y + GF v+ksk +k+ ++geit+rtfvC++eg++ +++++ k++ +r e r+gC a ++ k e ++ +e+++ + +HnHe+ Eucgr.C03166.1.p 13 YVVYTIDKGFGVKKSKIRKN-NKGEITQRTFVCNCEGYSINSSDQ--KRKYERLEVRCGCPAFIRFKVE-NDAYEIIDYVYKHNHEFI 96 899***********9998.8888**********999877..8999*************9.9************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-16	13	96	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-10	179	245	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MIFASELEAY HKYVVYTIDK GFGVKKSKIR KNNKGEITQR TFVCNCEGYS INSSDQKRKY 60 ERLEVRCGCP AFIRFKVEND AYEIIDYVYK HNHEFISEHQ RHLIKCGRMI SDTCNGILVD 120 MMKAGIGGTM TYKFLANKAG GSQNLGFILH DLQNQDGRLT NLFLRDSLFK FDYDCFGDVM 180 VFDTTNCASR YNLICAPFVG VNYHWKNTLF GCAFLLDEIA NSFIWLFEVF LKSMENKDPT 240 TIFID*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C03166.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056981.1	1e-120	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059CUA5	0.0	A0A059CUA5_EUCGR; Uncharacterized protein
STRING	XP_010056981.1	1e-119	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14997	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-34	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Eucgr.C03166.1.p