PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03175.1.p
Common NameEUGRSUZ_C03175
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 208aa    MW: 21959.6 Da    PI: 4.6439
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-181767155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Eucgr.C03175.1.p 17 SRYKGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALYCLRG 67
                      79******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-111767IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-211777IPR016177DNA-binding domain
CDDcd000183.56E-261777No hitNo description
Gene3DG3DSA:3.30.730.102.0E-281877IPR001471AP2/ERF domain
SMARTSM003809.0E-311881IPR001471AP2/ERF domain
PROSITE profilePS5103221.6011875IPR001471AP2/ERF domain
PRINTSPR003671.4E-81930IPR001471AP2/ERF domain
PRINTSPR003671.4E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDEGAGFSGG PADGGSSRYK GVRLRKWGKW VSEIRLPNSR ERIWLGSYDS PEKAARAFDA  60
ALYCLRGRQA QFNFPDSPPD IAGAQGLTPQ EIRAVAARFA NQGPEGSGRS RRNDDGHGHG  120
HGASSMAARE GGDNGNGNDG GGSSMDWSFL NALDVDCDGS GFGLYDGLDY VGGSQLEPPP  180
EASSTTYNAD DENGGGNGFY CHQLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1418751472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03175.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051344.21e-149PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC24e-45ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A059CUB81e-148A0A059CUB8_EUCGR; Uncharacterized protein
STRINGXP_010051344.11e-148(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]