PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03215.1.p
Common NameEUGRSUZ_C03215
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 296aa    MW: 32110.4 Da    PI: 8.9786
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03215.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-092848526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C++f++ GtCk Gd+C FaHg
  Eucgr.C03215.1.p 28 ACPDFRK-GTCKKGDSCEFAHG 48
                      6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-62449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-52552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3662850IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-72848IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-62950IPR000571Zinc finger, CCCH-type
SMARTSM003562.65881IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.395882IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYEFKVRKCP GEKARRRDPR RFLHSGTACP DFRKGTCKKG DSCEFAHGVF ECWLHPERYR  60
TQACKDGQSC RRRVCFFAHS PDQLLVLPAH QQQQQQQHSP KSATDSEFGS PVRPSAAAAA  120
AFDSYFTKPW SASFISSPTS ILTTSSPPIS PPTNSPPMSP NQRGGCCGSP GSVSELVTCM  180
RNMQIAKMKM SPRGQMAGSL FGSPLRPGCH LAAPVTPRAE SSPRYGQLGG GGGLFDLWES  240
HHRCEEEPLM ERVESGRDLR AKMYAKLSKG NSLDGAGLVG SGSGPDVGWV SELVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03215.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324864e-39AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAK1063924e-39AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence.
GenBankAP0149614e-39AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126134e-39CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018725834.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 35
TrEMBLA0A059CV960.0A0A059CV96_EUCGR; Uncharacterized protein
STRINGXP_010051352.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-62C3H family protein