PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03297.1.p
Common NameEUGRSUZ_C03297
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 191aa    MW: 20107.5 Da    PI: 5.8322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182370253
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                      +++GVr +k +grWv+eIr p++   r r++lg+++t+e+Aa+a +aa+ +l
  Eucgr.C03297.1.p 23 KFRGVRKRK-WGRWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAAAFCL 70
                      79****999.**********933...5**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-302386IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-192381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-282380IPR001471AP2/ERF domain
CDDcd000183.17E-172380No hitNo description
PfamPF008471.3E-112370IPR001471AP2/ERF domain
PROSITE profilePS5103221.7862380IPR001471AP2/ERF domain
PRINTSPR003672.2E-92435IPR001471AP2/ERF domain
PRINTSPR003672.2E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTKRSAAKAA AVHEGEGARS ELKFRGVRKR KWGRWVSEIR LPNSRERIWL GSYDTPEKAA  60
RAFDAAAFCL GRPAAKLNFP GSPPEISGAA SLSPDEIQSV AASYANFGAV AVPARAELPR  120
PGSPAPSPSV SASEASSVLT TESDLTLDLS FLDFLDDSGP VSGEPHLGNV ESAGLNLDTL  180
LASDSFPWRI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1423801472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03297.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051400.11e-110PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ9S7L51e-41ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A059CUB11e-131A0A059CUB1_EUCGR; Uncharacterized protein
STRINGXP_010051400.11e-109(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]