PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03434.2.p
Common NameEUGRSUZ_C03434
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 476aa    MW: 52707.5 Da    PI: 4.9265
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03434.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind84.31.7e-261512562101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.....X.TTSEEEEESXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.....k.ekiweFkhksFkk 88 
                       Fl+k+ye+++d++++ ++sws++ +sfvv+d++ef+k+vLp+yFkhsnf+SF+RQLn+Y+ kk   ++ ++++     + ++    + ++ ++
  Eucgr.C03434.2.p 151 FLRKTYEMVSDPSTDPVLSWSSSRDSFVVWDPHEFSKQVLPRYFKHSNFSSFIRQLNTYEGKKHLLKNIRRRRklsdhRtTSSSTVASDYPEA 243
                       9**********************************************************9988766665544433333123334444444467 PP

                       XXXXXXXXXXXXX CS
      HSF_DNA-bind  89 gkkellekikrkk 101
                       gk+ +le +kr +
  Eucgr.C03434.2.p 244 GKEAELEMLKRDQ 256
                       7777777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-33147222IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-27147217IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-25147222IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-23151254IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-14151174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-14189201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-14202214IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MTTALPGGGC TNGPCASFLD TLFRESSVEL KKAGPFTKSQ EEFASIAVLD SGDPGQLGSL  60
FDSVPSPQLA IGHGEVDTGL LLRPCLTRPE PHSALAAQVV KIEEGEEDEE VEIIADPRDA  120
AAVSPSCSLR AAADEVARPM QGLGEAGPAP FLRKTYEMVS DPSTDPVLSW SSSRDSFVVW  180
DPHEFSKQVL PRYFKHSNFS SFIRQLNTYE GKKHLLKNIR RRRKLSDHRT TSSSTVASDY  240
PEAGKEAELE MLKRDQEALK AEILKLREER ENSQHEINQV IERIRYAECR CWRMFLFLSK  300
AAKTPNFVQH VIQEKRQKRE LEACELSKKS KLLGPDDEAT KYLLDITDHK IQSPNVDCLR  360
IGDDSAPIES WPNNVLPLDL ETVQMHNPWS PPMGGADFRV MQGQTPDQMA GASPSDLPSV  420
FHEKSEKLLG DNMVVGNDAM DDPGIYLELE GLIEKSCGWR EYTIGLGKQA AGLMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-181422131791Heat shock factor protein 1
5d5v_B5e-181422131791Heat shock factor protein 1
5d5v_D5e-181422131791Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03434.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049465.20.0PREDICTED: heat shock factor protein HSF30
TrEMBLA0A059CUB60.0A0A059CUB6_EUCGR; Uncharacterized protein
STRINGXP_010049465.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-59heat shock transcription factor A2