PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03440.1.p
Common NameEUGRSUZ_C03440, LOC104438088
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 519aa    MW: 57928.5 Da    PI: 6.461
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.9e-351812722102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d+ ++ ++sw  +++sfvv+d++ef+k+vLp+yFkhsnf+SF+RQL +YgF+k++ ++         weF+++ F+kgkk+ll
  Eucgr.C03440.1.p 181 FLRKTYEMVSDPGTDPVVSWGLSQDSFVVWDRQEFSKQVLPRYFKHSNFSSFIRQLSTYGFRKINPDQ---------WEFANQGFQKGKKHLL 264
                       9********************888*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+++
  Eucgr.C03440.1.p 265 KNIKRRRN 272
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-55177270IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-33177270IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-37177270IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-16181204IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-31181270IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16219231IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16232244IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MTAFHGGAGG CFPGRANGSC PWFSETFFRD SSLELEKAKP FARSREEIAS FAVLDDDDHG  60
EIGSRSPLYS DLTRTDSSRS QSKARAGELG CCGSLSHSGP LPQVAIGDGK IEAGSRLHSC  120
LTRPELCSAL VVQAVKIKEE LEEEEVATTA AILSPSCSWQ AAAYDVAKPM EDLGVVGPTP  180
FLRKTYEMVS DPGTDPVVSW GLSQDSFVVW DRQEFSKQVL PRYFKHSNFS SFIRQLSTYG  240
FRKINPDQWE FANQGFQKGK KHLLKNIKRR RNLNKHRKKS RSTVTSDYQK AEKEAELKML  300
KKDQEALKTK ILKLIEEQDN LQHEIEQVAE QVRHADCRNQ HLLLFLIKAA KSPNFILHLT  360
PKKKQKRDLE TCESSKKREL LGPNAEATKC LLEAMDHMIQ SPKVDCLKIS DDLAQMERRP  420
NSVVPEHLGT FQMHNPWPSM DGEDFRVAQG QTPNQMTGAS SSDLSSVFQG ISEKLLKEDV  480
VIGTDADNIE VEDHLTLNDT GIYLELESLI DGMGTQVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2317427019129Heat shock factor protein 1
5d5v_B7e-2317427019129Heat shock factor protein 1
5d5v_D7e-2317427019129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263269LKNIKRR
2360366PKKKQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049467.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CV300.0A0A059CV30_EUCGR; Uncharacterized protein
STRINGXP_010049467.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-48heat shock transcription factor A2