PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03441.1.p
Common NameEUGRSUZ_C03465, LOC104438103
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 502aa    MW: 55593.9 Da    PI: 5.9776
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03441.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind285.7e-09185222239
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH CS
      HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldeeefakk 39 
                       Fl+k+ye+++d+ ++ ++sw  +++sfvv+d+++f+k+
  Eucgr.C03441.1.p 185 FLRKTYEMVSDPGTDPVVSWGLSQDSFVVWDQQQFSKE 222
                       9********************888************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.03E-17181253IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-10181222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-24181253IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-6185222IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-5223253IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MTAFHGGSCG CSPGRANGSC PWFSETFFRD SSLELEKAKP FARSREEIAS FAVLDGGNHG  60
EIGSRLPLYS DLSRTDSQSQ SKAREGELGC CGLLSHSGPL PQVAIGDGKI GAGPPLHSCL  120
TRPELCSALA VQAVKIKEEL EEEEVATTAD PRDAAILSPS CSWLAAAYDV AKPMEDLGVV  180
GPTPFLRKTY EMVSDPGTDP VVSWGLSQDS FVVWDQQQFS KEGFRKINPD RWEFVNQGFQ  240
KGKKHLLKNI KRRHNLNKHR KKSSSTVTSD YQKAEKEAKL KTLKKEQEAL KTKILKLREE  300
QDNLQHEIEQ VAEQVRHADC RNQLLFLFFI KAAKSPNFLL NLTPKKKQKR DLETCESSKK  360
RELLGPDAEA TKCLLEAMDH MIQSPKVDCL KISDDLAQME RRPNSVVPEQ FGTFQMHNPW  420
PSMDGEDFRV AQGQTPNQMT GASSSDLSSV FQGISEKLLK EDVVIGADAD NIEVEDHLTL  480
NDTGIYLELE SLINGMGTQV N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246252LKNIKRR
2343349PKKKQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03441.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049485.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CV880.0A0A059CV88_EUCGR; Uncharacterized protein
STRINGXP_010049485.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-29heat shock transcription factor A9