PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03447.1.p
Common NameEUGRSUZ_C03447
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 492aa    MW: 54913.8 Da    PI: 5.0322
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03447.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1131.9e-351512422102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Flkk+ye+++d++++ ++sw ++ +s+vv++++ef+k++Lp+yFkhsnf+SF+RQLn+YgF+++++++         weF+++sF+kgkk+ll
  Eucgr.C03447.1.p 151 FLKKTYEMVSDPSTDPVVSWGSSRKSIVVWNPHEFSKQLLPRYFKHSNFSSFIRQLNTYGFREMDTDQ---------WEFANRSFQKGKKHLL 234
                       9***************************************************************9998.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+++
  Eucgr.C03447.1.p 235 KNIRRRRK 242
                       *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-53147240IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-37147240IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-33147240IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-17151174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-31151240IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-17189201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-17202214IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MTTAPPGGGR TDEPCASFFD TLFREWSVEL EKAEPFARSR EEVASVAAVG GGVPGDLGSL  60
PHSVPSPKLA IADGEIDAGP LLRSCLTRPE PHPALAAQVV KIEEEEEDEE VAIIADPRNA  120
AAGSPSCSLQ AAADEVARPM QGLGEAGPAP FLKKTYEMVS DPSTDPVVSW GSSRKSIVVW  180
NPHEFSKQLL PRYFKHSNFS SFIRQLNTYG FREMDTDQWE FANRSFQKGK KHLLKNIRRR  240
RKLSRKTLSR TVASDYPEAG KEAELEMLKK DQEVLKTEIL KLREEREHSQ HEINQVAERI  300
RYAECRCRQI YLLSKATESP NFVHLIQERR QKRELEACES SEKNKLLSLD SEATKCLLEV  360
MDHKIQSPNV DCPRVGDDPG QMESWPNNVA PVDFQTVQMH NPWPPPIDGG DFRAVQGRTP  420
DQKAGASPSD LPSVFHEKSE KLLGDNVVMG DDAMDVEAKE LAMDDTGIYL ELEDLIEKSC  480
GWNRIMQSLH N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2214224017129Heat shock factor protein 1
5d5v_B4e-2214224017129Heat shock factor protein 1
5d5v_D4e-2214224017129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03447.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051446.10.0PREDICTED: heat shock factor protein HSF30
TrEMBLA0A059CV330.0A0A059CV33_EUCGR; Uncharacterized protein
STRINGXP_010051446.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-61heat shock transcription factor A2