PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03449.1.p
Common NameEUGRSUZ_C03449, LOC104438090
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 502aa    MW: 55701.5 Da    PI: 4.7952
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03449.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84e-341512422102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+yei++d+ ++ ++sws++ +sfvv+d++ f+k++Lp+yFkhsnf SFvRQLn+YgF+k+++++         weF+++ F++gkk+ll
  Eucgr.C03449.1.p 151 FLRKMYEIVSDPITDPVVSWSSSRDSFVVWDPHGFSKQLLPRYFKHSNFCSFVRQLNTYGFRKMDTDR---------WEFANRGFQEGKKHLL 234
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+++
  Eucgr.C03449.1.p 235 KNIRRRRK 242
                       *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-32147240IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-54147240IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-35147240IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.4E-17151174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-30151240IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-17189201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-17202214IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MTTAPPGGSL IDEPCASFFD TLLRESSFEL EKAEPFARSR EEIASVAVVG GGDPSDLGSL  60
PHSVPSPKLA NGHGEIDAGP PLRSCLTRPE PRSALAAQVV KIEEEEEDEE VAIIADPGDA  120
AAGSPSCSSR AAADEVARPM QGLGEVGPAP FLRKMYEIVS DPITDPVVSW SSSRDSFVVW  180
DPHGFSKQLL PRYFKHSNFC SFVRQLNTYG FRKMDTDRWE FANRGFQEGK KHLLKNIRRR  240
RKLSEHTKTS NSTVASDYPE AGKEAELEML KKDQEALKSE ILKLREEREH SQHEINQVAE  300
RVRYAECRCQ RMFLLLSKAT ESSNFVHLIQ ERRQKRELEA CESRKKSKLQ SPDSEVTKCL  360
LEVMDHKIQN PNVDCPRVGD DLAQMESRPN NVAPVDFQTV QMHNPWPPPM GGGDFRAVQG  420
QTPDWMAGAS SSDLPSVFHE MSEKLPGDNV VVGDNVMDVE AGELAMDDTG IYLELEGLIE  480
KSFGWSDYTS ELRELAVGLT P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2314224017129Heat shock factor protein 1
5d5v_B7e-2314224017129Heat shock factor protein 1
5d5v_D7e-2314224017129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03449.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049469.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CVV20.0A0A059CVV2_EUCGR; Uncharacterized protein
STRINGXP_010049469.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-67heat shock transcription factor A2