PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03465.1.p
Common NameEUGRSUZ_C03465, LOC104438103
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 523aa    MW: 58094.7 Da    PI: 6.3336
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03465.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.9e-351852762102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d+ ++ ++sw  +++sfvv+d+++f+k+vLp yFkhsnf+SF+RQLn+YgF+k++ ++         weF ++ F+kgkk+ll
  Eucgr.C03465.1.p 185 FLRKTYEMVSDPGTDPVVSWGLSQDSFVVWDQQQFSKEVLPGYFKHSNFSSFIRQLNTYGFRKINPDR---------WEFVNQGFQKGKKHLL 268
                       9********************888*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+++
  Eucgr.C03465.1.p 269 KNIKRRHN 276
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-33181274IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-54181274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-37181274IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-16185208IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-31185274IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-16223235IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340224248IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-16236248IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MTAFHGGSCG CSPGRANGSC PWFSETFFRD SSLELEKAKP FARSREEIAS FAVLDGGNHG  60
EIGSRLPLYS DLSRTDSQSQ SKAREGELGC CGLLSHSGPL PQVAIGDGKI GAGPPLHSCL  120
TRPELCSALA VQAVKIKEEL EEEEVATTAD PRDAAILSPS CSWLAAAYDV AKPMEDLGVV  180
GPTPFLRKTY EMVSDPGTDP VVSWGLSQDS FVVWDQQQFS KEVLPGYFKH SNFSSFIRQL  240
NTYGFRKINP DRWEFVNQGF QKGKKHLLKN IKRRHNLNKH RKKSSSTVTS DYQKAEKEAK  300
LKTLKKEQEA LKTKILKLRE EQDNLQHEIE QVAEQVRHAD CRNQLLFLFF IKAAKSPNFL  360
LNLTPKKKQK RDLETCESSK KRELLGPDAE ATKCLLEAMD HMIQSPKVDC LKISDDLAQM  420
ERRPNSVVPE QFGTFQMHNP WPSMDGEDFR VAQGQTPNQM TGASSSDLSS VFQGISEKLL  480
KEDVVIGADA DNIEVEDHLT LNDTGIYLEL ESLINGMGTQ VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2417827419129Heat shock factor protein 1
5d5v_B2e-2417827419129Heat shock factor protein 1
5d5v_D2e-2417827419129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273LKNIKRR
2364370PKKKQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03465.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049485.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CV880.0A0A059CV88_EUCGR; Uncharacterized protein
STRINGXP_010049485.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3454222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.12e-48heat shock transcription factor A9