PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03476.1.p
Common NameEUGRSUZ_C03476
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 549aa    MW: 61166.1 Da    PI: 7.3291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03476.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.1e-10373417554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h + Er+RR+++N++f  Lr+llP+      +K +Ka+ L  + e++ sL
  Eucgr.C03476.1.p 373 HMMSERKRREKLNESFLALRSLLPPG-----TKKDKASLLATTREHLGSL 417
                       8899********************97.....7999999999999998777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.24368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-16369441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.40E-12370422No hitNo description
Gene3DG3DSA:4.10.280.102.4E-13372434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7373417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-13374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDSAFLLDGD ARSNVLHLIA QSFGCRYICL WSYLTPTSCL CYLDGLFQEA AAASGGNDDN  60
VQARRLFDEY RQSLFILHPN SSHTQVPGLA FRNSNPYIEL REEDLSRLAS NSCQREFYQE  120
ASIKIAVFMG CSSGEIELGF SNIPQVDIQT QMMNLFPEDF SRQMAMRELA RATEPNTTPM  180
TNPPSSSSSS LRSLSMDSPE YSSLLFSIPT TTSSFINPEL ALRDPSIAEN ITTQSMPIMT  240
TTDTPGTSKT GASSHPLQAM HEYARSLGNI QFPIVPESEH AAMTRAFLAV LSSPSSSSFS  300
SQLQQQQTNV ENPRPTAFRR YSPGLPRPQI KHGPQKHSML KRSIAYCRSM NLMRIRERLQ  360
VGSRQPSTTQ LHHMMSERKR REKLNESFLA LRSLLPPGTK KDKASLLATT REHLGSLKEQ  420
VEDLRRKNTV LQAQLLPPKE PTSSGSPGDG SRVEVQTRTV SESTSQDRTV DLQVTVRGDC  480
PAMSLVIRIL EFLRQVRNVS LMSMDADTQV HESNIVNRVN LRLNVEGGEW DEPGFQEAVR  540
RVVADLAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376381ERKRRE
2377382RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03476.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051453.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
RefseqXP_018726993.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A059CUF40.0A0A059CUF4_EUCGR; Uncharacterized protein
STRINGXP_010051453.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.18e-62bHLH family protein