PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C04050.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 504aa    MW: 55374.6 Da    PI: 7.7871
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C04050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.91.1e-28203256155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr++W+ +LH++Fv+aveqL G +kA+Pk+il+lm+v+g+t+e+v+SHLQkYRl
  Eucgr.C04050.1.p 203 KPRVVWSVDLHRKFVSAVEQL-GYDKAVPKKILDLMNVEGITRENVASHLQKYRL 256
                       79*******************.********************************8 PP
2Response_reg60.96.7e-214112526109
                       EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
      Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        +++++++ al++l++k+  +Dl++ D++mp+mdG++ll+     e++lp+i++++hg+ e++ + +  Ga d+l Kp  +eel +
  Eucgr.C04050.1.p  41 FTTTSEATVALKMLRDKRnrFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSGHGDTELVMKGITHGACDYLLKPARMEELKN 125
                       468899999*****888788*******************87754.558**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-1391496IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.6E-3122145No hitNo description
SuperFamilySSF521722.7E-2922143IPR011006CheY-like superfamily
SMARTSM004486.5E-2323127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.8324131IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.11E-2326130No hitNo description
PfamPF000721.4E-1741125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129411.7200259IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-30200261IPR009057Homeodomain-like
SuperFamilySSF466893.05E-19201260IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-25203256IPR006447Myb domain, plants
PfamPF002498.4E-7205255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MTVEDKKSGV LNEDGKDPFP VGMRVLAVDD DASCLKVWRV FTTTSEATVA LKMLRDKRNR  60
FDLVISDVNM PDMDGFKLLE LVGLEMDLPV IMLSGHGDTE LVMKGITHGA CDYLLKPARM  120
EELKNIWQHV VRRKNIEPKE RSKFANVVKP LDGSGAGEQG PASTCNVDPN GKPNKKRKDL  180
TDDEEEDCEE NGHEIDDQSN QKKPRVVWSV DLHRKFVSAV EQLGYDKAVP KKILDLMNVE  240
GITRENVASH LQKYRLYLKR LNTNGASQAA FGDFHALAGS GRLSSTSLSS YAAGGMLGRL  300
STPTSLGFRG ITSSAAYRTN HIQKFSSSVN AVGARTANPF QGIPTCLELN QLQQGNVKTP  360
VGEFNIDTTN ASVATNLSDT RAVTGVSSNS LYVPRSNQAF LRGNQAQTQD IGGFVSGPSF  420
VDKCRSNDMW HASMQSSSFP SSNPLPLTGT MNLDQRSMGS SLATHNYMKA ELTSCQLAQW  480
QELWMNIEVT FSVRRGWSIL CRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-23201262364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C04050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727197.10.0PREDICTED: two-component response regulator ORR23-like
SwissprotQ6K8X61e-112ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A059CW160.0A0A059CW16_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010051666.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-98response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]