PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C04180.1.p
Common NameEUGRSUZ_C04180, LOC104438509
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 343aa    MW: 38038.8 Da    PI: 7.4055
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C04180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.7e-0987111126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+ C  f   G C+ G++C+FaHg
  Eucgr.C04180.1.p  87 WKTRMCAKFKI-GMCRNGENCNFAHG 111
                       8**********.*************9 PP
2zf-CCCH28.42.8e-09149171325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       ++lC+ f+ + +C+yGdrC+F H
  Eucgr.C04180.1.p 149 MKLCKKFYNGEECPYGDRCNFLH 171
                       689******66************ PP
3zf-CCCH41.42.3e-13228253126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+lC  +  tG+C++G++C+FaHg
  Eucgr.C04180.1.p 228 WKTKLCTKWEITGQCPFGEKCHFAHG 253
                       8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.7E-1482119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-884117IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-486112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.02386113IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-587111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117146174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7146173IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4146173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-9149172IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-7149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-15224260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-10226258IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7227254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544227255IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNFSEPGLPL MPAMLHYVGG GVGGDAGGYW SQFELKSEEF DVNSEFDQPL APPSKRPRNF  60
EDNRSGSVAS NPRPNPPVNK GTTNIFWKTR MCAKFKIGMC RNGENCNFAH GVEDMRQPPP  120
NWQELVGVRD EDNKSSGNWE DDQKIIHRMK LCKKFYNGEE CPYGDRCNFL HEDPAKFRDD  180
SGRFRETSAI CIGTTGMPTG QGTGSSQSDV SRPNTGADSR VTSKPVYWKT KLCTKWEITG  240
QCPFGEKCHF AHGLADLQSP SGRFEGDAVQ TALVVATKPQ PQLLHINDGP PLMAAKGPTS  300
TEEAQSKKCL LRWKGHKKIN QIYGDWLDDL PLVQNLPNKV ES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C04180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049974.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-97C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A059CX530.0A0A059CX53_EUCGR; Uncharacterized protein
STRINGXP_010049974.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-97C3H family protein