PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00044.1.p
Common NameEUGRSUZ_D00044
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 247aa    MW: 28053.8 Da    PI: 6.9043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.8e-151865148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd++lv ++k++G  +W+  a+  g+ Rt+k+c++rw +yl
  Eucgr.D00044.1.p 18 KGAWSAEEDQKLVAYIKRYGIWNWTHMAEPAGLARTGKSCRLRWMNYL 65
                      79******************99************************97 PP
2Myb_DNA-binding50.35.7e-1672114246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g+ T+eE+e+++++++ lG++ W++Ia+++  gRt++++k++w++
  Eucgr.D00044.1.p  72 GNITQEEEEIIINLHRVLGNR-WASIASRLS-GRTDNEIKNYWNT 114
                       678******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.121365IPR017930Myb domain
SuperFamilySSF466897.11E-2916112IPR009057Homeodomain-like
SMARTSM007178.3E-111767IPR001005SANT/Myb domain
PfamPF002493.9E-131865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-231972IPR009057Homeodomain-like
CDDcd001672.96E-92065No hitNo description
PROSITE profilePS5129423.67666120IPR017930Myb domain
SMARTSM007173.6E-1570118IPR001005SANT/Myb domain
PfamPF002498.7E-1472114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2473119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MARFPRVDKS NSKKTVKKGA WSAEEDQKLV AYIKRYGIWN WTHMAEPAGL ARTGKSCRLR  60
WMNYLRPNIK HGNITQEEEE IIINLHRVLG NRWASIASRL SGRTDNEIKN YWNTRLKKRF  120
LMENLQMPTA WDVKVNSSHN DPLSCQDSSI ALIDATKAQN LGSACGIDRV DETLVNGLVS  180
PGNKIDKVEE NIWEQLVALK DLCILEDFEG TCSNSGTKSP ASECMYSEPM YFGESYEDFL  240
IDLWGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30181207108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00044.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030551.11e-160PREDICTED: myb-related protein 308-like
TrEMBLA0A059CB380.0A0A059CB38_EUCGR; Uncharacterized protein
STRINGXP_010030551.11e-160(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-43myb domain protein 14