PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00050.1.p
Common NameEUGRSUZ_D00050, LOC104440631
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 262aa    MW: 29982.1 Da    PI: 8.194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-131865148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l  +++++G  +W+  ++  g+ Rt+k+c++rw +yl
  Eucgr.D00050.1.p 18 KGTWSAEEDQKLTAYIRRYGIWNWAHMPNPAGLARTGKSCRLRWMNYL 65
                      799*****************99************************97 PP
2Myb_DNA-binding50.16.4e-1672114246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g+ T+eE++l++++ ++lG++ W++Ia++++ gRt++++k++w++
  Eucgr.D00050.1.p  72 GNITKEEEDLIIKLQQLLGNK-WAAIAARLP-GRTDNEIKNYWNT 114
                       678******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.521365IPR017930Myb domain
SuperFamilySSF466891.2E-2816112IPR009057Homeodomain-like
SMARTSM007174.5E-91767IPR001005SANT/Myb domain
PfamPF002492.0E-111865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-211972IPR009057Homeodomain-like
CDDcd001671.76E-82065No hitNo description
PROSITE profilePS5129424.70966120IPR017930Myb domain
SMARTSM007172.2E-1570118IPR001005SANT/Myb domain
PfamPF002491.1E-1472114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2473119IPR009057Homeodomain-like
CDDcd001673.35E-1175116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVGRPLRPNK SSDPTVKKGT WSAEEDQKLT AYIRRYGIWN WAHMPNPAGL ARTGKSCRLR  60
WMNYLRPNIR HGNITKEEED LIIKLQQLLG NKWAAIAARL PGRTDNEIKN YWNTRLKKRV  120
GYKNKLQIPI ACDIKVKPNH NNGSSHPYAC LPTIDTPKLE AGIGSQYEIP TMSENSFCTS  180
YGVQYDDKTS ENSWYSPCSV TEEEERLREQ FLALRDIEIE ENFCGMYMHS GATDPALVCM  240
QQELVYHSGS CQDFIMDLWG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141203108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051859.10.0PREDICTED: transcription repressor MYB5
TrEMBLA0A059CCL10.0A0A059CCL1_EUCGR; Uncharacterized protein
STRINGXP_010051859.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.12e-46myb domain protein 41