PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00184.1.p
Common NameEUGRSUZ_D00184, LOC104440709
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93008.2 Da    PI: 6.5033
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00184.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-191876357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Eucgr.D00184.1.p 18 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 76
                      6789*****************************************************97 PP
2START171.84.4e-541683752204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +a e+++++++ka+ ++  Wv++  +++g++++ +++ s++++g a+r++g+v  +++  v+e+l+d++ W ++++  e+l+vi  g  g+++
  Eucgr.D00184.1.p 168 IAAETLTQFLAKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARVCGLVSLEPM-KVAEILKDRPSWFRDCRCLEVLNVIPAGngGTIE 259
                       578999****************************************************.8888888888*****************999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++++a+++l++ Rdf++vRy+ +l++g++vi+++S++  +  p+   sss+vRae+lpSg+li+p+++g+  +++v+hvdl++++++++l
  Eucgr.D00184.1.p 260 LVYMQTYAPTTLAAaRDFWTVRYTTTLEDGSLVICERSLTTSTGGPSgpsSSSFVRAEVLPSGYLIRPCEGGGAIIHIVDHVDLDAWSVPEVL 352
                       *******************************************9999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + ++k++va+l++ +
  Eucgr.D00184.1.p 353 RPLYESSKILAQKMTVAALRHIR 375
                       *******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611377IPR001356Homeobox domain
SMARTSM003896.0E-151581IPR001356Homeobox domain
SuperFamilySSF466892.27E-161880IPR009057Homeodomain-like
PfamPF000462.4E-161876IPR001356Homeobox domain
CDDcd000868.21E-171878No hitNo description
Gene3DG3DSA:1.10.10.609.6E-192076IPR009057Homeodomain-like
CDDcd146866.25E-570109No hitNo description
PROSITE profilePS5084825.339158386IPR002913START domain
SMARTSM002349.2E-49167377IPR002913START domain
Gene3DG3DSA:3.30.530.206.4E-22167372IPR023393START-like domain
SuperFamilySSF559616.73E-37168379No hitNo description
PfamPF018521.5E-51168375IPR002913START domain
PfamPF086705.6E-48702847IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MALAMHRECS SKQMDASKYV RYTPEQVEAL ERVYNECPKP SSLRRQQLIR ECPILCNIEP  60
KQIKVWFQNR RCREKQRKEA YRLQTVNRKL NAMNKLLMEE NDRLQKQVSQ LVYENGYMRQ  120
QLHSQASTAT TDNSCESVVM SGQHQQQHNP TPQHPEKDAS SPAGLLAIAA ETLTQFLAKA  180
TGTAVDWVQM IGMKPGPDSI GIVAVSRNCN GVAARVCGLV SLEPMKVAEI LKDRPSWFRD  240
CRCLEVLNVI PAGNGGTIEL VYMQTYAPTT LAAARDFWTV RYTTTLEDGS LVICERSLTT  300
STGGPSGPSS SSFVRAEVLP SGYLIRPCEG GGAIIHIVDH VDLDAWSVPE VLRPLYESSK  360
ILAQKMTVAA LRHIRQIAQE SSGEIQYGGS RQPAVLRTFS QKLCRGFNDA VNGFVDDGWS  420
VLSSDGVEDV TIAVNSSPNK FLGSQYNATI FPNFGRGVLC AKASMLLQNV PPAVLVRFLR  480
EHRSEWADHG IDAYSAASLK TSSYAIPCVR PGGFPSSHVI LPLAHTVEQE EFLEVVRLEG  540
HAFSPEDIPL AHDMYLLQLC SGVDENAVGA CAQLVFAPID ESFADDAPLL PSGFRVIQLD  600
PKTDGPAPTR TLDLASTLEV GSGGARPTCE ADASTYNLRS VLTIAFQFVF ENHLRDTVAI  660
MARQYVRSVV GSVQRVAMAI APSRLGGHLG PKSLSGSPEA LTLARWICRS YRICAGAELL  720
RGDSQAGDAV LKEFWHHSDA IMCCSVNTNV ASPVFTFANQ AGLDMLETTL VALQDIMLEK  780
VLDEGGRKVL SSEFPKIMQQ GIAYLPAGVC ISSMGRPVAY EQAVAWKVLN DDDSHHCLAF  840
MFMNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00184.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051959.10.0PREDICTED: homeobox-leucine zipper protein HOX32 isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A059CCX40.0A0A059CCX4_EUCGR; Uncharacterized protein
STRINGXP_010051959.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]