PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00184.4.p
Common NameEUGRSUZ_D00184, LOC104440709
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 821aa    MW: 89739.5 Da    PI: 6.462
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00184.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.61.2e-142491457
                      HHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox 14 eLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Eucgr.D00184.4.p  2 ALERVYNECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 49
                      7*********************************************97 PP
2START171.94.1e-541403472204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +a e+++++++ka+ ++  Wv++  +++g++++ +++ s++++g a+r++g+v  +++  v+e+l+d++ W ++++  e+l+vi  g  g+++
  Eucgr.D00184.4.p 140 IAAETLTQFLAKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARVCGLVSLEPM-KVAEILKDRPSWFRDCRCLEVLNVIPAGngGTIE 231
                       578999****************************************************.8888888888*****************999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++++a+++l++ Rdf++vRy+ +l++g++vi+++S++  +  p+   sss+vRae+lpSg+li+p+++g+  +++v+hvdl++++++++l
  Eucgr.D00184.4.p 232 LVYMQTYAPTTLAAaRDFWTVRYTTTLEDGSLVICERSLTTSTGGPSgpsSSSFVRAEVLPSGYLIRPCEGGGAIIHIVDHVDLDAWSVPEVL 324
                       *******************************************9999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + ++k++va+l++ +
  Eucgr.D00184.4.p 325 RPLYESSKILAQKMTVAALRHIR 347
                       *******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.3E-4154IPR001356Homeobox domain
PROSITE profilePS5007114.414150IPR001356Homeobox domain
CDDcd000861.72E-12251No hitNo description
Gene3DG3DSA:1.10.10.601.5E-14249IPR009057Homeodomain-like
SuperFamilySSF466891.88E-12253IPR009057Homeodomain-like
PfamPF000463.2E-12249IPR001356Homeobox domain
CDDcd146866.00E-54382No hitNo description
PROSITE profilePS5084825.339130358IPR002913START domain
Gene3DG3DSA:3.30.530.206.0E-22139344IPR023393START-like domain
SMARTSM002349.2E-49139349IPR002913START domain
PfamPF018521.4E-51140347IPR002913START domain
SuperFamilySSF559616.32E-37140351No hitNo description
PfamPF086705.4E-48674819IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MALERVYNEC PKPSSLRRQQ LIRECPILCN IEPKQIKVWF QNRRCREKQR KEAYRLQTVN  60
RKLNAMNKLL MEENDRLQKQ VSQLVYENGY MRQQLHSAST ATTDNSCESV VMSGQHQQQH  120
NPTPQHPEKD ASSPAGLLAI AAETLTQFLA KATGTAVDWV QMIGMKPGPD SIGIVAVSRN  180
CNGVAARVCG LVSLEPMKVA EILKDRPSWF RDCRCLEVLN VIPAGNGGTI ELVYMQTYAP  240
TTLAAARDFW TVRYTTTLED GSLVICERSL TTSTGGPSGP SSSSFVRAEV LPSGYLIRPC  300
EGGGAIIHIV DHVDLDAWSV PEVLRPLYES SKILAQKMTV AALRHIRQIA QESSGEIQYG  360
GSRQPAVLRT FSQKLCRGFN DAVNGFVDDG WSVLSSDGVE DVTIAVNSSP NKFLGSQYNA  420
TIFPNFGRGV LCAKASMLLQ NVPPAVLVRF LREHRSEWAD HGIDAYSAAS LKTSSYAIPC  480
VRPGGFPSSH VILPLAHTVE QEEFLEVVRL EGHAFSPEDI PLAHDMYLLQ LCSGVDENAV  540
GACAQLVFAP IDESFADDAP LLPSGFRVIQ LDPKTDGPAP TRTLDLASTL EVGSGGARPT  600
CEADASTYNL RSVLTIAFQF VFENHLRDTV AIMARQYVRS VVGSVQRVAM AIAPSRLGGH  660
LGPKSLSGSP EALTLARWIC RSYRICAGAE LLRGDSQAGD AVLKEFWHHS DAIMCCSVNT  720
NVASPVFTFA NQAGLDMLET TLVALQDIML EKVLDEGGRK VLSSEFPKIM QQGIAYLPAG  780
VCISSMGRPV AYEQAVAWKV LNDDDSHHCL AFMFMNWSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00184.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051960.10.0PREDICTED: homeobox-leucine zipper protein HOX32 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A059CBZ90.0A0A059CBZ9_EUCGR; Uncharacterized protein
STRINGXP_010051959.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]