PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00267.1.p
Common NameEUGRSUZ_D00267
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 187aa    MW: 21054.3 Da    PI: 9.5047
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00267.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1521111298
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       fk+   sd+l sg l +p++f++++g+    s    l+ + g  W ++l  +k+ ++ ++l+kGW+eF +   +  g  +vFk++g+s+f  +
  Eucgr.D00267.1.p  21 FKII-LSDTLDSGKLGIPRRFLKKYGNH--LSSLAFLKVSLGSNWPIEL--KKCNNGtVWLQKGWREFMEYYSIGHGHLIVFKYEGDSTF--R 106
                       4444.5999****************865..777999999**********..66555559***************************9999..6 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                         +f+
  Eucgr.D00267.1.p 107 AIIFD 111
                       66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-2313113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-2217113IPR015300DNA-binding pseudobarrel domain
CDDcd100179.58E-1718111No hitNo description
PROSITE profilePS5086313.1419113IPR003340B3 DNA binding domain
SMARTSM010195.8E-1320113IPR003340B3 DNA binding domain
PfamPF023621.1E-1321111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MACCRCCCRQ REDERAGPHF FKIILSDTLD SGKLGIPRRF LKKYGNHLSS LAFLKVSLGS  60
NWPIELKKCN NGTVWLQKGW REFMEYYSIG HGHLIVFKYE GDSTFRAIIF DKSTSEIDYS  120
SSSGGSNPGP VFRGPTHPRP LTRLELANKF ESEHPFFKVV MPPSSMKTSL VKFCFDAFVG  180
SVKGQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00267.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065668.15e-53PREDICTED: B3 domain-containing protein REM13 isoform X2
TrEMBLA0A059CBY51e-136A0A059CBY5_EUCGR; Uncharacterized protein
STRINGXP_010052028.19e-52(Eucalyptus grandis)
STRINGXP_010065667.19e-52(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-23B3 family protein