PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00269.1.p
Common NameEUGRSUZ_D00269, LOC104440764
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 439aa    MW: 50155.5 Da    PI: 8.1286
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00269.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59e-17321242100
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       fk+   s +l+sg l +pk+f++++g++   s  + l+ + g +W vkl  +k++++ ++l kGW++F +   +  g  +vFk++g+s f  +
  Eucgr.D00269.1.p  32 FKIV-LSRALESGKLGIPKSFLRRYGKD--LSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWRGFMEHYSIGHGHLLVFKYKGDSVF--H 117
                       4443.488899999***********977..7779***************..8887777****************************9999..9 PP

                       EEEE-SS CS
                B3  94 vkvfrks 100
                       v +f+ks
  Eucgr.D00269.1.p 118 VIIFDKS 124
                       9999985 PP
2B357.13.4e-18198290199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv +++ + +++ l++p++f+ +h +k   +k++     s rsW+vkl  r +  +  l+ GW++F+++ gL  gD +vF+l++r++  ++
  Eucgr.D00269.1.p 198 FFKVVVQPTYVRKS-LTIPREFFIKHVQK---NKQIATLRYSDRSWQVKL--RSHEHMACLSIGWSSFARETGLLLGDCCVFELIDRDDIVFR 284
                       89999999999998.***********544...23577777899*******..*********************************99999999 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v++fr+
  Eucgr.D00269.1.p 285 VSIFRS 290
                       999986 PP
3B337.44.6e-12334428198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+ v +++++ k++ +++p +f++++ +k ++  ++      g+s+ev+l++ ++    +l+ GW+  +++ +L+ gD+++F+l +r++  l+
  Eucgr.D00269.1.p 334 FCNVVISPSHIKRQTVTIPWQFIRTYIQKDHQ--MVN-VVYLGQSFEVNLRVYQHLHIAILGVGWSALAREAHLRKGDVCMFELLDRDNIVLR 423
                       7788999999****************444333..444.44589*******88888888*************************9999999899 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+vf+
  Eucgr.D00269.1.p 424 VSVFS 428
                       99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.9E-2425124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2426124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-1829122No hitNo description
PROSITE profilePS5086313.63430124IPR003340B3 DNA binding domain
SMARTSM010192.3E-1531124IPR003340B3 DNA binding domain
PfamPF023625.2E-1432123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-24190292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-21192291IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.492197291IPR003340B3 DNA binding domain
CDDcd100175.89E-14197289No hitNo description
PfamPF023621.6E-15198290IPR003340B3 DNA binding domain
SMARTSM010198.0E-17198291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-14327428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-13330427IPR015300DNA-binding pseudobarrel domain
CDDcd100176.46E-9333428No hitNo description
PfamPF023625.8E-10334428IPR003340B3 DNA binding domain
PROSITE profilePS5086310.503334430IPR003340B3 DNA binding domain
SMARTSM010192.9E-7334430IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGRRLRHRRR REGGGVEPEM DPGSPPSSPH FFKIVLSRAL ESGKLGIPKS FLRRYGKDLS  60
GLVLLKVPGG STWPVKLEKS DDGKVWLWKG WRGFMEHYSI GHGHLLVFKY KGDSVFHVII  120
FDKSASEIDY PSSIESDMLS PEEEFLSRKE EDVVEIKDSE GSMPCSRPSS YRSSREYGVP  180
SLLAAFELAS EFKSEHPFFK VVVQPTYVRK SLTIPREFFI KHVQKNKQIA TLRYSDRSWQ  240
VKLRSHEHMA CLSIGWSSFA RETGLLLGDC CVFELIDRDD IVFRVSIFRS DGQILTEQSQ  300
CQEHPSESAF HASPCLSPVI AHERACQFES EYPFCNVVIS PSHIKRQTVT IPWQFIRTYI  360
QKDHQMVNVV YLGQSFEVNL RVYQHLHIAI LGVGWSALAR EAHLRKGDVC MFELLDRDNI  420
VLRVSVFSSA NKEVICIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211RRLRHRRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00269.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052032.10.0PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A059CCI60.0A0A059CCI6_EUCGR; Uncharacterized protein
STRINGXP_010052032.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-22B3 family protein