PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00311.1.p
Common NameEUGRSUZ_D00311, LOC104442539
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19741.6 Da    PI: 9.9917
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00311.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.27.7e-221153345
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      + ++s rqvtfskRr+g++KKA+EL +LC++++a+i+fs+ gk
  Eucgr.D00311.1.p 11 VTDSSTRQVTFSKRRTGLFKKANELAILCAVQIAIIVFSPGGK 53
                      56899***********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.988161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-27173IPR002100Transcription factor, MADS-box
CDDcd002656.16E-33271No hitNo description
PRINTSPR004041.7E-19323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRRKIEIEM VTDSSTRQVT FSKRRTGLFK KANELAILCA VQIAIIVFSP GGKPFSFGHP  60
NVESIVHRFR NQDRTPDEGT SKGAESRDEN TTDDNLNQKL LDLLKRLNAE EKRGEMLEKM  120
VKAKRAVKGQ PPADQLGLPE LGELKRSFED LRRKLRDRID DMEAISSLLL LAEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-16169169MEF2C
5f28_B7e-16169169MEF2C
5f28_C7e-16169169MEF2C
5f28_D7e-16169169MEF2C
6byy_A6e-16169169MEF2 CHIMERA
6byy_B6e-16169169MEF2 CHIMERA
6byy_C6e-16169169MEF2 CHIMERA
6byy_D6e-16169169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00311.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054261.11e-124PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A059CBZ01e-123A0A059CBZ0_EUCGR; Uncharacterized protein
STRINGXP_010054261.11e-123(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-36AGAMOUS-like 29