PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D00592.1.p

Common Name

EUGRSUZ_D00592

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 230aa MW: 26457.2 Da PI: 9.1878

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D00592.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.4	7.3e-33	57	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+Ptd+e++ e+L++k+ g+ + +++i++++ i+ ++P++Lp v+++ + +fF++ +++yatg+rk+r Eucgr.D00592.1.p 57 LPAGVKFDPTDQEIL-EHLEAKIMGDVrkihflI--DQFIPTLEgdegICCTHPERLP-GVSKDGQIRHFFHRPARAYATGTRKRRRvhnnad 145 799*********9.99**9995554321..233444323344******.555666777**************6355555 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++vl+ ++ ++g kk+Lv+y gr++k+ekt+Wvmh+y+l Eucgr.D00592.1.p 146 ERETRWHKTGKTRSVLA-GRVVKGFKKILVLYnnYGRQRKPEKTNWVMHQYHL 197 44899********.999*******65579************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-36	48	216	IPR003441	NAC domain
PROSITE profile	PS51005	31.948	57	216	IPR003441	NAC domain
Pfam	PF02365	9.2E-16	58	197	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTWQMEDAGA IIPPTHNPRD EDEDGNNALL PTIACPSCGH SFPLFDQREI VHDLVGLPAG 60 VKFDPTDQEI LEHLEAKIMG DVRKIHFLID QFIPTLEGDE GICCTHPERL PGVSKDGQIR 120 HFFHRPARAY ATGTRKRRRV HNNADERETR WHKTGKTRSV LAGRVVKGFK KILVLYNNYG 180 RQRKPEKTNW VMHQYHLGKS EEERDGELVV SKVFHQTQPR RPMLIYKVR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	138	RKRRR
2	135	139	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D00592.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010052264.1	1e-167	PREDICTED: NAC domain-containing protein 73
Swissprot	O49459	2e-97	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A059CD74	1e-171	A0A059CD74_EUCGR; Uncharacterized protein
STRING	XP_010052264.1	1e-167	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-100	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Eucgr.D00592.1.p

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]