PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00596.1.p
Common NameEUGRSUZ_D00596, LOC104440989
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-other
Protein Properties Length: 1741aa    MW: 195737 Da    PI: 5.1583
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00596.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-182883257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       kR+  t+ qle+Le+++  ++yps++ r+eL+ klgLt+rq ++WF+ rR k+k+
  Eucgr.D00596.1.p 28 PKRQMKTPFQLETLEKAYSIEMYPSEAIRAELSVKLGLTDRQLQMWFCHRRLKDKN 83
                      69***************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-18983IPR009057Homeodomain-like
SuperFamilySSF466895.99E-161883IPR009057Homeodomain-like
PROSITE profilePS5007115.5162484IPR001356Homeobox domain
SMARTSM003896.2E-182688IPR001356Homeobox domain
PfamPF000461.9E-152882IPR001356Homeobox domain
CDDcd000864.87E-142985No hitNo description
PROSITE profilePS5082715.749546605IPR018501DDT domain
SMARTSM005711.1E-19546605IPR018501DDT domain
PfamPF027913.2E-16547602IPR018501DDT domain
PfamPF050661.5E-15728796IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156129.0E-8941985IPR028942WHIM1 domain
PfamPF156136.5E-1411251195IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1741 aa     Download sequence    Send to blast
MEEGGSEGEK QGRSPGKAGN SGEGPSKPKR QMKTPFQLET LEKAYSIEMY PSEAIRAELS  60
VKLGLTDRQL QMWFCHRRLK DKNNSSEKKL QKSAAAVGMK EGIKDGLMAV ADPGSDYGSG  120
SGSGSSPYAS RELQGMVPRR DGDDSAIGRR CYESPRTIME LRAIACVEAQ LGEPLREDGP  180
ILGMEFDPLP PDAFGAPIVA DEEQKGPVNP YDGKVYVRRD AVSNKAASRL LHHEYQLLHD  240
QPVRYHTPGR IAQTHYLDDP LDGPTTRVSS IHGSEKLPSV DGVRGHRLRV CRVSQEDREG  300
NRVLSPLRDD HSLQPRESFV NIQMDAHQGS HPFIGQEDSS TLPDRTILHD TSDLHVKRKR  360
KIEEAQITRE VEANEHRNRK ALEKENIMRR KAEERMRKEM ERFDRERRKE EERLMREQQR  420
EEERLLREQR RELERREKYL QKESIKAEKK RQKEELRREK EAERRKAAVE KATARRIAKE  480
SMELMEDEQL ELMELAAASK GLPSIVNLDH ATMQNLELFR DSLSAFPPQS VRLKRPFAVQ  540
PWTNSEENIG KLLMAWRFFL TFADVLGLWP FTLDEFVQAF HDYDSRLLGE LHVALLKSII  600
RDIEDVARTP ATGLGINQNN AANPEGGHPQ IVEGAYAWGF DIRKWQKHLY PLTWPEILRQ  660
LALSAGFGPQ LKKRAVARPC RQDIDEVKGC EEVISTLRSG SAAEKALTIM RDKGLLLPRR  720
SRHRLTPGTV KFAAFHVLSL EGSKGLTVLE LADKIQKSGL RDLTTSKTPE ASISVALTRD  780
TKLFERIAPS TYRVRSAYRK DPADAESILA EARKKIRIFE NGILSGEDAD EVEREDEGER  840
DEEFEGDVDE DLEVDDLATT LSANNDVDQC GQVNACPEIG KENVSDDTNL QNEIEGDVES  900
CTVASSVDVC HPSTATEHHK DAEDFCGGKD DQESVEIDES KSGESWVRGL TEGEYSHLSV  960
EERLNALVAL IGIANEGNSI RAVLEDRLEA ASALKKQMWV EAQLDKSRLK DEFTAKVDFL  1020
SLLGSKTEFQ LPNSVVDGSH SSWLLADNKN NDVSAENQNS LHGPQGLQND LSSVPTERFS  1080
AVQDSAGGPG GPDNFSMQYG HGSKRSRTQL KSYIAHRAEE IYVYRSLPLG QDRRRNRYWW  1140
FVASASKNDP GSGRIFVELH DNSWRLIDTE EAFDALLMSL DTRGIRESHL RLMLLEVDPL  1200
FKENVRRNLQ SAKVFSRGGL PVKNEPAEMD SSPDCPNDFD SPNSTVCASN SDSFETSSSI  1260
KIELGRNEFE KKAALKRYQD LQKWMWKECC ISSSLSSIKV RKKRCDQLLG ICDSCLSTYF  1320
FEAIHCQSCH KTFGSEFDFS LNHVGCEDKR KLEHGYFHIL DYSLPLGIRL IKALLAYLEV  1380
HIPSEAIHSF WLEDMDCRKT WGMKLNASSS TEELLQMVTL LEGAIKREYL SADFELSKEL  1440
LGLVRNTGDE SKSSEAVSVL PWIPQTTAAV ALRLFELDSS ITYVKQEKSE PGVDMALEDY  1500
MKLPVNTPSI KLNETEPSEG DQELQMKDLS ADVIKGRNCK KRGLGSRDRS NARMHQRRPG  1560
AKPFAGKQTS LNVESLNRGF TQQGQGYGRG RRTLRRRRTE GKAVQGRLLG NMVETARPNI  1620
IKDSTAVEEW AAEQKSPVRL VTADNSNSME EAESDENEVV AYEFDRGNWE VGLDGTSNGW  1680
GKMDLSDEDV DFYDNNKGIE DVVDEDSEGD ADLGDADNMA LDTIPNGESL DSAVSEDYSE  1740
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00596.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1584972e-32AC158497.2 Medicago truncatula chromosome 2 clone mth2-48e18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052269.10.0PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A059CD790.0A0A059CD79_EUCGR; Uncharacterized protein
STRINGXP_010052269.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1