PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00616.1.p
Common NameEUGRSUZ_D00616, LOC104441008
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 188aa    MW: 21246.2 Da    PI: 7.1596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00616.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-091260555
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       + +Er+RR++++  +++L +l+ + +   p +  s  + L +A++YIk+Lq
  Eucgr.D00616.1.p 12 RKLIERNRRHHMKALYSQLNSLVHHhS---PTEVTSLPDQLHEATNYIKKLQ 60
                      5789*********************55...8888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.06E-4564No hitNo description
SuperFamilySSF474591.7E-11674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.179759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-10973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-61360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00811365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MENGPSSSKS DRKLIERNRR HHMKALYSQL NSLVHHHSPT EVTSLPDQLH EATNYIKKLQ  60
INLEKMKEKK ESLLGIAKMN TSMNNGMDVA SNSPEIEIHQ SGSSLQVILI TGLDHQFMFN  120
HVISLLHEDG VKILNASFSV LEDKAFHSIH CEVGDCAPSL DSARIYERLR KCVQDNAQRQ  180
LFQTLDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00616.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052302.11e-137PREDICTED: uncharacterized protein LOC104441008
RefseqXP_018727726.11e-137PREDICTED: uncharacterized protein LOC104441008
TrEMBLA0A059CDG51e-136A0A059CDG5_EUCGR; Uncharacterized protein
STRINGXP_010052302.11e-136(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-37bHLH family protein