PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00627.1.p
Common NameEUGRSUZ_D00627, LOC104441018
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 258aa    MW: 29766.1 Da    PI: 6.7978
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00627.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.75.6e-31671519102
                       HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
      HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                       ++++++ +++isw+++g+ fvv+ + ef++++LpkyFkh+nf+SF+RQLn+YgFkk+++++         weFkh+ F+kg ++ l +i rkk
  Eucgr.D00627.1.p  67 MMKKKKKRKMISWNKEGSGFVVWCPAEFSEHMLPKYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFKHDRFHKGCRHRLAEITRKK 150
                       88999****************************************************9998.........*********************98 PP

                       X CS
      HSF_DNA-bind 102 s 102
                        
  Eucgr.D00627.1.p 151 C 151
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.8E-3123143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-3327149IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-2367149IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-2767149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAAREEVSEQ NSNLQSTSRS PSPRTRGPAP FLLKTFDLLE EAGGDDLGEE EEEEEEDDDD  60
DGDGEGMMKK KKKRKMISWN KEGSGFVVWC PAEFSEHMLP KYFKHNNFSS FIRQLNTYGF  120
KKTSSKRWEF KHDRFHKGCR HRLAEITRKK CEPSVFPQFL RPSKDHHKNS NNSSSSNGNA  180
QTSASFLEED GRVQLMEENK NLRREKMELE TQIAQFKAIE MKLLDCLGQY VGNNPHPHHH  240
HEKIMSYKSN FGGYGEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-127614945129Heat shock factor protein 1
5d5v_B2e-127614945129Heat shock factor protein 1
5d5v_D2e-127614945129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874KKKKKRK
26875KKKKKRKM
36974KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00627.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052317.10.0PREDICTED: heat stress transcription factor B-2a
TrEMBLA0A059CCQ30.0A0A059CCQ3_EUCGR; Uncharacterized protein
STRINGXP_010052316.11e-141(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-34heat shock transcription factor B2A