PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00877.1.p
Common NameEUGRSUZ_D00877
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 203aa    MW: 22317.7 Da    PI: 4.676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00877.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-083579554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      + e+ErrRR ++ +++ +Lr+l+Pk      + ++ a+iL  A  YI +L
  Eucgr.D00877.1.p 35 NLEAERRRRLKLSQRLLTLRSLVPKI-----TNMNLATILDDAATYIVEL 79
                      6689*********************6.....58**************777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.17E-72883No hitNo description
SuperFamilySSF474592.62E-132994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.2563079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-123196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-53479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-73685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDGLCLSEIG GCKDGRIGRG QLEDDGDDTQ FKSKNLEAER RRRLKLSQRL LTLRSLVPKI  60
TNMNLATILD DAATYIVELK KNVDALSDQL LEMEASSEDG PKALVDEIDA AQDMEANGIK  120
PDVQVTGIDE HKLWIKIVIP KRRSQFTKLL EMLSICGFEL TDTSITTFKG AMLISSCMEG  180
ASGEMLKASQ TKDLLQEIIK GI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00877.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054452.11e-137PREDICTED: transcription factor DYT1
TrEMBLA0A059CE311e-143A0A059CE31_EUCGR; Uncharacterized protein
STRINGXP_010054452.11e-136(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-32bHLH family protein