PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D01036.1.p

Common Name

EUGRSUZ_D01036, LOC104442814

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 354aa MW: 38654.9 Da PI: 7.1696

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D01036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.7	3.1e-18	22	120	2	84
trihelix 2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 W +e++ Liea++ ++er +++ +p+W++v +++++rg+ rs++qC++kw+nl ++ykk++e e++rt e++ Eucgr.D01036.1.p 22 WNVNETMILIEAKKMDDERRTKRSeesgegvgggagrggakPSEPRWKWVEDYCWRRGCCRSQNQCNDKWDNLMRDYKKVREYERRRTGEEE- 113 99*********977766665434667778888888887799*****************************************976665. PP trihelix 78 tcpyfdq 84 +++ + + Eucgr.D01036.1.p 114 EVASYWK 120 5555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.377	14	95	IPR017877	Myb-like domain
Pfam	PF13837	1.1E-12	21	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MADQSGGGGN NAMMRDYRKG NWNVNETMIL IEAKKMDDER RTKRSEESGE GVGGGAGRGG 60 AKPSEPRWKW VEDYCWRRGC CRSQNQCNDK WDNLMRDYKK VREYERRRTG EEEEVASYWK 120 IEKSERKERN LPTNMMPQIY EALVDVVERR AGGGGGGAGG SQRATAAASA SITAYSIGHP 180 NPDVIVSTGY VVETPIQPPL PPQQHVLPGP IVPALPPPSQ TPEAPPQLPS AAASQPFPSP 240 ESEPSEHSDT PAKRRRRGGD RGGAASEDRH EPGDVGTAIS RSASIIAEAL QACDEREERR 300 HRDLVGLHER RLKLEESKTE INRQGIDGLV SAIDKLANSI HALASSSKNQ SSS*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MADQSGGGGN NAMMRDYRKG NWNVNETMIL IEAKKMDDER RTKRSEESGE GVGGGAGRGG  60
AKPSEPRWKW VEDYCWRRGC CRSQNQCNDK WDNLMRDYKK VREYERRRTG EEEEVASYWK  120
IEKSERKERN LPTNMMPQIY EALVDVVERR AGGGGGGAGG SQRATAAASA SITAYSIGHP  180
NPDVIVSTGY VVETPIQPPL PPQQHVLPGP IVPALPPPSQ TPEAPPQLPS AAASQPFPSP  240
ESEPSEHSDT PAKRRRRGGD RGGAASEDRH EPGDVGTAIS RSASIIAEAL QACDEREERR  300
HRDLVGLHER RLKLEESKTE INRQGIDGLV SAIDKLANSI HALASSSKNQ SSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D01036.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010054505.1	0.0	PREDICTED: uncharacterized protein LOC104442814
TrEMBL	A0A059CEJ0	0.0	A0A059CEJ0_EUCGR; Uncharacterized protein
STRING	XP_010054505.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-50	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D01036.1.p
Entrez Gene	104442814