PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01054.1.p
Common NameEUGRSUZ_D01054, LOC104441262
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family BBR-BPC
Protein Properties Length: 324aa    MW: 35857.5 Da    PI: 9.8896
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind395.48e-12113231301
         GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 
                       mdd g+re  r+k+ +y++a  + l +++   +q+m ++aerda+++ernlalsekkaa+aerd+af+qrd+a+aern+a +erdn++++l++
  Eucgr.D01054.1.p   1 MDDGGHREngRHKAdHYKNAqsQWLMQHQpsMKQIMGIMAERDAALQERNLALSEKKAAIAERDIAFHQRDMAIAERNNAYLERDNAIATLQY 93 
                       9*****999*****99995544344444321469*********************************************************** PP

         GAGA_bind  87 vensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173
                       +ensl+    s++p+g+q+++g+k++++ qq +++ + +++ a+++r+++ ++alpi+  a+ea++++++k++++ak   ++k+       +k
  Eucgr.D01054.1.p  94 RENSLTsgniSSCPPGCQISRGVKHMHHPQQqVHHvSSMSEAAYGTRDMHPSDALPISPVASEATRSRQTKRTKEAKAMSTSKK------APK 180
                       ****9999999******************995556899*******************998888888777775554443322222......222 PP

         GAGA_bind 174 skkkvkkesader...............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251
                       + kkvk+e++d +                k+++k +dl+ln+v++D+st+P PvCsCtG+ rqCYkWGnGGWqS+CCtttiS+yPLP+++++r
  Eucgr.D01054.1.p 181 TPKKVKRETDDLNkllngddgynkpfgvPKSDWKGQDLGLNQVAFDDSTMPSPVCSCTGIARQCYKWGNGGWQSSCCTTTISMYPLPAVPNKR 273
                       22222222222111333445667899989**************************************************************** PP

         GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       +aR++grKmS++af klL++LaaeGydls pvDLkdhWAkHGtn+++ti+
  Eucgr.D01054.1.p 274 HARVGGRKMSGSAFGKLLSRLAAEGYDLSSPVDLKDHWAKHGTNRYITIK 323
                       *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062177.1E-1041323IPR010409GAGA-binding transcriptional activator
SMARTSM012261.7E-1721323IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDDGGHRENG RHKADHYKNA QSQWLMQHQP SMKQIMGIMA ERDAALQERN LALSEKKAAI  60
AERDIAFHQR DMAIAERNNA YLERDNAIAT LQYRENSLTS GNISSCPPGC QISRGVKHMH  120
HPQQQVHHVS SMSEAAYGTR DMHPSDALPI SPVASEATRS RQTKRTKEAK AMSTSKKAPK  180
TPKKVKRETD DLNKLLNGDD GYNKPFGVPK SDWKGQDLGL NQVAFDDSTM PSPVCSCTGI  240
ARQCYKWGNG GWQSSCCTTT ISMYPLPAVP NKRHARVGGR KMSGSAFGKL LSRLAAEGYD  300
LSSPVDLKDH WAKHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052611.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010052612.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010052613.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010052615.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010052616.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_018727567.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_018727568.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_018727569.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_018727571.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-152BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A059CE000.0A0A059CE00_EUCGR; Uncharacterized protein
STRINGXP_010052611.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-141basic pentacysteine 6