PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D01346.1.p

Common Name

EUGRSUZ_D01346

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 102aa MW: 11689.9 Da PI: 10.7667

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D01346.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	7.6e-34	26	79	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++aveqLGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Eucgr.D01346.1.p 26 PRLRWTPDLHQCFMHAVEQLGGEDRATPKMVLQIMSVKGLTISHVKSHLQMYRS 79 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.705	22	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-33	22	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-17	23	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-26	26	80	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	27	78	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MLALLPLGTI SRRPSVVRPY VRSKTPRLRW TPDLHQCFMH AVEQLGGEDR ATPKMVLQIM 60 SVKGLTISHV KSHLQMYRSM KHEQIMQGHL YNSTTFLCIF L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-22	27	82	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-22	27	82	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-22	27	82	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	27	82	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	27	82	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	27	82	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-22	27	82	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-22	27	82	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-22	27	82	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-22	27	82	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-22	27	82	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-22	27	82	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D01346.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018728305.1	2e-57	PREDICTED: uncharacterized protein LOC108959263 isoform X1
Refseq	XP_018728306.1	2e-57	PREDICTED: uncharacterized protein LOC108959263 isoform X2
Swissprot	Q700D9	2e-28	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A059CF66	4e-69	A0A059CF66_EUCGR; Uncharacterized protein
STRING	VIT_00s1624g00010.t01	2e-43	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-30	G2-like family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D01346.1.p