PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D01630.1.p

Common Name

EUGRSUZ_D01630

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 165aa MW: 18446.2 Da PI: 8.9136

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D01630.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	40	83	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r+RR++i ++ eL +l+P +K++ ae+L+ A +Y+k+Lq Eucgr.D01630.1.p 40 LAARQRRRKITEKTLELGKLVPGG-----RKMNTAEMLQAAYKYVKYLQ 83 567*****************96.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.186	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-12	36	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.84E-8	36	86	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-11	37	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-11	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	40	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MLPPQPEPHF QQERCGSCGG RENGTKKPSV GGETLSTQSL AARQRRRKIT EKTLELGKLV 60 PGGRKMNTAE MLQAAYKYVK YLQAQVGILE LNESIQKNEE TRHSKRELQV LLESPKIQEK 120 LYAEEKCLAT KELVQAFAKD PEVQSTDTIG KEIVQLLCAH GWNI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D01630.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010053035.1	1e-116	PREDICTED: transcription factor bHLH53 isoform X2
Swissprot	Q84RD0	2e-30	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A059CFM4	1e-116	A0A059CFM4_EUCGR; Uncharacterized protein
STRING	XP_010053034.1	1e-108	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	7e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D01630.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]