PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01674.1.p
Common NameEUGRSUZ_D01674
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRF
Protein Properties Length: 361aa    MW: 39553.4 Da    PI: 8.415
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01674.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.45.3e-2364107144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+ep+rCrRtDGKkWRCsr+v + +k+CErH h++r rsrk++e
  Eucgr.D01674.1.p  64 DPEPWRCRRTDGKKWRCSRDVAPHQKYCERHSHKNRPRSRKPVE 107
                       79***************************************987 PP
2QLQ26.71.8e-101048236
               QLQ  2 aFTaaQlql..LksQilAyKyLaanqPvP..peLlqaiq 36
                      +FTaaQ+q+  +++Q + +K+++ ++PvP  peL+++i+
  Eucgr.D01674.1.p 10 PFTAAQWQEmdMERQSMMLKHMLTSVPVPagPELILPIT 48
                      9********555*****************6667777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF088801.9E-51047IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.52764108IPR014977WRC domain
PfamPF088791.4E-1865107IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAASTNARVP FTAAQWQEMD MERQSMMLKH MLTSVPVPAG PELILPITRS LPTVLPPQSN  60
RGSDPEPWRC RRTDGKKWRC SRDVAPHQKY CERHSHKNRP RSRKPVELQA DYTKAANATT  120
KKSNVTTTNS QSLSSCQNPQ FLNQTPIPSS VFPTAAASAY DQPRGLEWFM KAETIPSQED  180
YHHHQQPMHA ACNRIDPFHL KQPHMPLSSY SDYGSTHELH ETRHFIDAWS APHRDDSSNR  240
AASVSAGKKM PVSSLSLTMC GIGEEDSKNT DMGPGLMGGE REKSGDLRPP HWMMSPAGSW  300
MGSTTPGGPL AEALCLGTAN ASSARMAAAC EATPQGRISV TPTSSRSSSK DEGHELNLIS  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01674.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085415e-45DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053063.10.0PREDICTED: growth-regulating factor 8
TrEMBLA0A059CHA70.0A0A059CHA7_EUCGR; Uncharacterized protein
STRINGXP_010053063.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-37growth-regulating factor 8