PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01731.1.p
Common NameEUGRSUZ_D01731, LOC104441655
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 302aa    MW: 33532.7 Da    PI: 8.6739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01731.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19114163356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p +   r+r++lg++++ae Aa a+++a+ kl+ge
  Eucgr.D01731.1.p 114 YRGVRQRH-WGKWVAEIRLPQN---RTRVWLGTYDSAESAAYAYDRAAFKLRGE 163
                       9******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-22113170IPR016177DNA-binding domain
SMARTSM003807.4E-36113176IPR001471AP2/ERF domain
PROSITE profilePS5103223.222113170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-31113171IPR001471AP2/ERF domain
PRINTSPR003674.9E-10114125IPR001471AP2/ERF domain
PfamPF008478.0E-14114163IPR001471AP2/ERF domain
CDDcd000181.47E-32114171No hitNo description
PRINTSPR003674.9E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDTILQNLPP VTYTNHNDGG NIPSSLSELI LKGFGSNTLD LIFSNSDRTN STTDNTPIRE  60
TLGSSIYMLH RDLMQKFCNR NNSNMYLTHA ASVPASQQYD NMSPYPVPPK KKMYRGVRQR  120
HWGKWVAEIR LPQNRTRVWL GTYDSAESAA YAYDRAAFKL RGEYARLNFP ELKDLKDLKD  180
LKESGLADSK KLNAVRSSVD AKINAICQKA RKERVRRSTR KGEGSATQAT SCSSSPSSSS  240
SWGSEVMLSP SCSEEEEMRR LVSSNPSVSA GSTGPELVLE GCSLETMPSF DLELIWEILA  300
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21112170160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-21110170263ATERF1
3gcc_A9e-21110170263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01731.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053127.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-55ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A059CG700.0A0A059CG70_EUCGR; Uncharacterized protein
STRINGXP_010053127.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]