PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01924.1.p
Common NameEUGRSUZ_D01924, LOC104443140
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 265aa    MW: 28038.2 Da    PI: 5.901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01924.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-1692140255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Eucgr.D01924.1.p  92 FYRGIR--SRSGKWVSEIREPRK---TTRVWLGTYPTPEMAAAAYDVAALALKG 140
                       69***6..678*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.40292148IPR001471AP2/ERF domain
SMARTSM003803.5E-2992154IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1892149IPR016177DNA-binding domain
CDDcd000181.31E-1693150No hitNo description
PfamPF008471.2E-993140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2693149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSDPSSPKYE AHVVQSSAEL DPPPPQPLPS PSPPPPPPLA LHALDQTPHS LPAYAGDAPS  60
PKGKSPSPRH LQRSSPRSNP SGSASSGGKH PFYRGIRSRS GKWVSEIREP RKTTRVWLGT  120
YPTPEMAAAA YDVAALALKG GDAVLNFPHL VKSYPVPAST APTDVRRAAA AAAASRKAET  180
SGGTDDTALL GQEGDEGKTR KDHRPDLSSK PPEAEFIDEE ALFDMPNLLV DMAEGMMVSP  240
PRISSPPSDD SPDNSDMESL WSYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1581149373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01924.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693723e-33AC169372.2 Sorghum bicolor clone SB_BBc0156J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054789.10.0PREDICTED: ethylene-responsive transcription factor ERF025
SwissprotQ9FJ907e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A059CI540.0A0A059CI54_EUCGR; Uncharacterized protein
STRINGXP_010054789.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]