PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D01948.1.p

Common Name

EUGRSUZ_D01948

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 155aa MW: 16968.4 Da PI: 8.3383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D01948.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.00011	3	38	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + Lr+ lP + ++K s ++ ++v+YI+++q Eucgr.D01948.1.p 3 TLYGSLRKQLPIEF--LKGKRSISDHIHETVNYIRHMQ 38 56789*****65..9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-5	3	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-4	28	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MATLYGSLRK QLPIEFLKGK RSISDHIHET VNYIRHMQNK IQALSDRRDE LKGLSDSGAP 60 KETPECSRTA CSQGDTVMVQ SCMAGVEILI NTASQQGLPL SRAFKALSEE GVNVFSCNST 120 EVSERILHSI KAEVTKGGNG NLFELQQKLM KLTT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D01948.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010053369.1	1e-110	PREDICTED: transcription factor bHLH120
TrEMBL	A0A059CHD1	1e-110	A0A059CHD1_EUCGR; Uncharacterized protein
STRING	XP_010053369.1	1e-109	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D01948.1.p