PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02083.1.p
Common NameEUGRSUZ_D02083, LOC104441918
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 370aa    MW: 41649.9 Da    PI: 6.3095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048230252123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k+F+++  L  H   H
  Eucgr.D02083.1.p 230 HQCEVCKKVFRSSQALGGHRVIH 252
                       79***********9998887666 PP
2zf-C2H212.90.00034291313123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+Cp Cg++F +   L  H r+H
  Eucgr.D02083.1.p 291 YECPFCGRVFGNGQALGGHKRSH 313
                       99**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.6426IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-4528IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.9E-10228252No hitNo description
PfamPF139123.0E-7229254IPR007087Zinc finger, C2H2
SMARTSM003550.047230252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286230252IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
SuperFamilySSF576674.9E-10286313No hitNo description
Gene3DG3DSA:3.30.160.604.0E-4287313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.4E-10290314IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.845291313IPR007087Zinc finger, C2H2
SMARTSM003550.011291313IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MERPRCKLCF RTFANGRALG GHMKAHLASL KIHRTHVAES ITSYPSSSSP EEEEEEEEEE  60
QQQQQQEEEQ EEEQESSRGD QEIEEKSLIY GLRENPRRSV KCADPEFSFS GGSGFAVVQD  120
RESETESRNP TRRRSKRTRR KLGGCDDNAE DEKQRKQKLK PSQPSSPAEP EPVSSVSDTS  180
PEEDVAMCLM LLSRDKWRRK RRDGDDHDRE EVEEGQKGNL MGNEAERKHH QCEVCKKVFR  240
SSQALGGHRV IHRKSVGLMG CDKKRQEDER ERRDGGWSKE MVMARKKERV YECPFCGRVF  300
GNGQALGGHK RSHMMGLGGS SVGGNGDGAQ SSRSKVSANL LDLNLPAPAE EDNFSVVSDD  360
GEFTQPIKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02083.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053481.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLA0A059CHX30.0A0A059CHX3_EUCGR; Uncharacterized protein
STRINGXP_010053481.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17350611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-21C2H2-like zinc finger protein