PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02099.2.p
Common NameEUGRSUZ_D02099
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 158aa    MW: 18215.4 Da    PI: 6.5232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02099.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-173479148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Eucgr.D02099.2.p 34 RGNISDEEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 79
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.1931428IPR017877Myb-like domain
SuperFamilySSF466891.38E-211485IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-121440IPR009057Homeodomain-like
PROSITE profilePS5129426.4872983IPR017930Myb domain
SMARTSM007177.1E-163381IPR001005SANT/Myb domain
PfamPF002493.2E-153479IPR001005SANT/Myb domain
CDDcd001672.10E-113879No hitNo description
Gene3DG3DSA:1.10.10.601.4E-214179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MTGFCSAFFF SGLNRCGKSC RLRWLNYLRP NIKRGNISDE EEDLILRLHR LLGNRWSLIA  60
GRLPGRTDNE IKNYWNSHLS KKINQRQEVS TAQETTSQLR TRVAAPMEEE GANIVGSSEP  120
TFDVNEFFDF STEGSYGLEW VNKFLELDED RCLTEKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21158440109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02099.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053502.11e-105PREDICTED: transcription factor MYB114
SwissprotQ9LTF72e-39MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A059CHZ81e-112A0A059CHZ8_EUCGR; Uncharacterized protein
STRINGXP_010053502.11e-105(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.17e-42myb domain protein 82