PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02129.1.p
Common NameEUGRSUZ_D02129, LOC104441964
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 546aa    MW: 60467.6 Da    PI: 7.0412
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02129.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16741135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Eucgr.D02129.1.p  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                      ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.2E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-11545No hitNo description
CDDcd002028.22E-17655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003207.1E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139192.1E-9294371IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPGDYEDH  60
RFGRGKNISI NINKNKEVKV PKRKQYTDDM VFGGIMSDYN QGFQKFIDDD TSNRSSSGSA  120
ISNSDAQFGS ADASDLTGPA QSVVWDSMVP SRKRTCVNRP KPSPVEKLTR DLHTILHEQQ  180
SSCLSGSSEE DLLLESEMPM GSVEIGHGTV LIRHPSGIAR DEESEASSLS VDRKHYKRSE  240
AYSRPASIPL YNNARMVSSP SAKPGMERSK NSSGQGMRVE HLRRDISQHE KLQGLGNHNS  300
PLCHINLKEL LNFEEFTRLL NDDERRQLLK YLPPVDNSQL PDSLEYLFDS PIFEENLSSF  360
QKLLSEGVFD RSFLGVKAED YKTLRRLALS SSMKCKWVEC LQQLQDSKNT SGESTAGRYH  420
ANLARNLING KRVRDIQSQN FPEAKMMMKS PKGGAWKGSC ENKDLLDNDG SCFSPRSLFA  480
LPPDNSTLML DSFPVIDESN DQDLLVDVPS NGSFAQAELL HPALSFGSQQ ASTGSSSGYP  540
NALHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02129.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053539.10.0PREDICTED: GATA transcription factor 26
TrEMBLA0A059CHC90.0A0A059CHC9_EUCGR; Uncharacterized protein
STRINGXP_010053539.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-123GATA transcription factor 26