PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02129.2.p
Common NameEUGRSUZ_D02129
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 448aa    MW: 49703.9 Da    PI: 7.3163
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02129.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.3e-16740134
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                      C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg
  Eucgr.D02129.2.p  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKG 40
                      ****************88888**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-8152IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-10541No hitNo description
CDDcd002021.30E-15656No hitNo description
Gene3DG3DSA:3.30.50.101.3E-12740IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003201.6E-13740IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.754756IPR000679Zinc finger, GATA-type
PfamPF139191.6E-9196273IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG PAQSVVWDSM VPSRKRTCVN  60
RPKPSPVEKL TRDLHTILHE QQSSCLSGSS EEDLLLESEM PMGSVEIGHG TVLIRHPSGI  120
ARDEESEASS LSVDRKHYKR SEAYSRPASI PLYNNARMVS SPSAKPGMER SKNSSGQGMR  180
VEHLRRDISQ HEKLQGLGNH NSPLCHINLK ELLNFEEFTR LLNDDERRQL LKYLPPVDNS  240
QLPDSLEYLF DSPIFEENLS SFQKLLSEGV FDRSFLGVKA EDYKTLRRLA LSSSMKCKWV  300
ECLQQLQDSK NTSGESTAGR YHANLARNLI NGKRVRDIQS QNFPEAKMMM KSPKGGAWKG  360
SCENKDLLDN DGSCFSPRSL FALPPDNSTL MLDSFPVIDE SNDQDLLVDV PSNGSFAQAE  420
LLHPALSFGS QQASTGSSSG YPNALHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02129.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053539.10.0PREDICTED: GATA transcription factor 26
TrEMBLA0A059CHY30.0A0A059CHY3_EUCGR; Uncharacterized protein
STRINGXP_010053539.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-71GATA transcription factor 26