PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02223.1.p
Common NameEUGRSUZ_D02223
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 793aa    MW: 87360.1 Da    PI: 5.6814
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02223.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20102157156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Eucgr.D02223.1.p 102 KKRYHRHTARQIQEMEALFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 157
                       688899***********************************************998 PP
2START155.25.4e-493075362206
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                       la + ++el k+ la+ep+Wv+ss  e g++vl  +e ++                 + ea+r+s+vv+m++ +lv  ++d + +W   ++  
  Eucgr.D02223.1.p 307 LAMSSMEELSKMCLASEPLWVQSS--ESGKVVLNFEEHARLfpwplnnnlkqnsdkLRKEASRDSAVVIMNSITLVDAFMDAG-KWMDLFPti 396
                       677899******************..777777776666555*************99999************************.998888888 PP

                       ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECT CS
             START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksn 159
                         +a+ ++vi sg      g l lm+aelq+lsp+vp R+ +f+Ry++q   +g+w+ivd   ds  ++    +s+ R  + pSg++i++++n
  Eucgr.D02223.1.p 397 vsRAKNIQVIASGvagharGSLNLMYAELQVLSPMVPtRETYFLRYCQQnVDEGSWAIVDFPMDSLHNNLAsPPSMPRYIRQPSGCVIQDMPN 489
                       88***********************************************9999*******999999888776678889999************ PP

                       CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       g+s+vtwveh++ ++++ h l+ ++vk g+a+ga +w+a lqrqce+
  Eucgr.D02223.1.p 490 GYSRVTWVEHAEIEEKVGHPLFSQFVKCGMAFGAHRWLAVLQRQCER 536
                       *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-2090160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-2295165IPR009057Homeodomain-like
PROSITE profilePS5007117.31399159IPR001356Homeobox domain
SMARTSM003899.9E-19100163IPR001356Homeobox domain
CDDcd000866.16E-19102160No hitNo description
PfamPF000465.3E-18102157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PROSITE profilePS5084843.079297539IPR002913START domain
SuperFamilySSF559611.51E-30300536No hitNo description
CDDcd088754.18E-109301535No hitNo description
SMARTSM002345.2E-34306536IPR002913START domain
PfamPF018521.9E-41307536IPR002913START domain
SuperFamilySSF559611.28E-15556773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MFGDCQVMSS MGGTGISAES LFSSPIRNPN FDFMSSLPFN AFAPLIPKEE EINGMLGGSS  60
NSKEEMVDSG GSGSEHFLEE KSSANELLDL DGGDQDQPAN KKKRYHRHTA RQIQEMEALF  120
KECPHPDDKQ RMRLSQELGL KPRQVKFWFQ NRRTQMKAQQ DRADNAILRA ENDNLKNENY  180
RLQAALRNIV CPNCGGPGML GEMGFDEQQL RIENARLKEE LERVCCLASR YSGQQIQSIP  240
VLPPLSLLPP SLDLEMTIYP PRHFPEAMSS CSDIMPMPLL PQDTPHHLSE STGLILMEDE  300
KALALELAMS SMEELSKMCL ASEPLWVQSS ESGKVVLNFE EHARLFPWPL NNNLKQNSDK  360
LRKEASRDSA VVIMNSITLV DAFMDAGKWM DLFPTIVSRA KNIQVIASGV AGHARGSLNL  420
MYAELQVLSP MVPTRETYFL RYCQQNVDEG SWAIVDFPMD SLHNNLASPP SMPRYIRQPS  480
GCVIQDMPNG YSRVTWVEHA EIEEKVGHPL FSQFVKCGMA FGAHRWLAVL QRQCERARKN  540
LMRLAQRMIR TFSTNISTSG GQSWTALSDS SDDTIRITTR KITEPGQPNG VVLAAVSTTW  600
LPYPHHHVFE LLKDERRRSQ LDVLSNGNSL QEVAHIANGS HPGNCISLLR INVASNSSQH  660
VELMLQESCT DASGSLVVYS TIDVDSIQLA MNGEDPSHLP LLPIGFSIVP FGSGSPGSDS  720
GANDNLGLDA CPQGEGCLLT VGLQVLASTI PTAKLSLSSV NAINNHLCMA VHQITAALAS  780
SSSNGNSSPA PCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02223.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053633.10.0PREDICTED: homeobox-leucine zipper protein HDG5
RefseqXP_018727880.10.0PREDICTED: homeobox-leucine zipper protein HDG5
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A059CHR50.0A0A059CHR5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010053633.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7