PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02248.1.p
Common NameEUGRSUZ_D02248, LOC104442068
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 841aa    MW: 89950.2 Da    PI: 6.2435
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02248.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-21127182156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Eucgr.D02248.1.p 127 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 182
                       688999***********************************************999 PP
2START205.81.7e-643405691206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela++a++elvk+a+ +ep+W +s     e++n+de++++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+++    + +
  Eucgr.D02248.1.p 340 ELALAAMDELVKMAQTNEPLWIRSLeggrEMLNRDEYMRTFSPCIGmkpngFVTEASRETGMVIINSLALVETLMDSN-RWAEMFPcmiaRTS 431
                       5899**************************************9998999*9***************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksngh 161
                       t +vi+sg      galqlm+aelq+lsplvp R+++f+R+++q+ +g+w++vdvSvd  ++ p       s   ++++lpSg+++++++ng+
  Eucgr.D02248.1.p 432 TADVICSGmggtrnGALQLMQAELQVLSPLVPvREVTFLRFCKQHAEGVWAVVDVSVDGIRETPGggggaASFPSCCRRLPSGCVVQDMPNGY 524
                       ************************************************************9999888874444479***************** PP

                       EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       skvtwveh++++++++h+l+r+l++sg+ +g ++wvatlqrqc++
  Eucgr.D02248.1.p 525 SKVTWVEHAEYDENHIHQLYRPLISSGMGFGSQRWVATLQRQCQC 569
                       *******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-22113184IPR009057Homeodomain-like
SuperFamilySSF466891.34E-20113184IPR009057Homeodomain-like
PROSITE profilePS5007117.216124184IPR001356Homeobox domain
SMARTSM003899.9E-18125188IPR001356Homeobox domain
CDDcd000861.38E-18126184No hitNo description
PfamPF000461.4E-18127182IPR001356Homeobox domain
PROSITE patternPS000270159182IPR017970Homeobox, conserved site
PROSITE profilePS5084841.413331572IPR002913START domain
SuperFamilySSF559613.02E-31334569No hitNo description
CDDcd088754.04E-124335568No hitNo description
SMARTSM002346.2E-52340569IPR002913START domain
PfamPF018522.2E-56340569IPR002913START domain
SuperFamilySSF559612.75E-24597833No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MSFGGFLDTN SGGGGGGGGG ARVVAADIPY AGKNDMAPSG AIGQPRLLSP SLSKSMFNNS  60
PGLSLALQTG IENQQMGESY EQMSVSNHHL RRSREEEHES RSGSDNLDGG GASGDDQDAS  120
ADNPPRKKRY HRHTPQQIQE LEALFKECPH PDEKQRLELS KRLCLETRQV KFWFQNRRTQ  180
MKTQLERHEN SLLRQENDKL RAENMSLRDA MREPICSNCG GPAVIGEISL EEQHLRIENA  240
RLKDELDRVC ALAGKFLGRP VPSLAASIGP LMPNSSLELG VGTNNGFVGS LGPVAATTLP  300
LGPDFGGGIS GNSAMAVVNP SRPPGAGGGM VSIERSILLE LALAAMDELV KMAQTNEPLW  360
IRSLEGGREM LNRDEYMRTF SPCIGMKPNG FVTEASRETG MVIINSLALV ETLMDSNRWA  420
EMFPCMIART STADVICSGM GGTRNGALQL MQAELQVLSP LVPVREVTFL RFCKQHAEGV  480
WAVVDVSVDG IRETPGGGGG AASFPSCCRR LPSGCVVQDM PNGYSKVTWV EHAEYDENHI  540
HQLYRPLISS GMGFGSQRWV ATLQRQCQCL AILMSSTVSS RDHTAITPSG RRSMLKLAQR  600
MTANFCAGVC ASTVHKWNKL SGGNVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVSP  660
QRLFDFLRDE QLRSEWDILS NGGPMQEMAH IAKGQDHGNC VSLLRASAMN ANQSSMLILQ  720
ETCIDAAGSL VVYAPVDIPA MHVVMNGGDS AYVALLPSGF AIVPDGPDGP GSHGGGAAPN  780
GPAASNGGPP RVGGSLLTVA FQILVNSLPT AKLTVESVET VNNLISCTIQ KIKAALQCES  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02248.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053664.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A059CIN00.0A0A059CIN0_EUCGR; Uncharacterized protein
STRINGXP_010053664.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]